%global __brp_check_rpaths %{nil}
%global packname  PoDBAY
%global packver   1.4.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.4.3
Release:          1%{?dist}%{?buildtag}
Summary:          Vaccine Efficacy Estimation Package

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6
Requires:         R-core >= 3.6
BuildRequires:    R-methods >= 3.5.2
BuildRequires:    R-CRAN-ggplot2 >= 3.1.0
BuildRequires:    R-CRAN-Rcpp >= 1.0.0
BuildRequires:    R-CRAN-dplyr >= 0.8.0.1
BuildRequires:    R-stats 
Requires:         R-methods >= 3.5.2
Requires:         R-CRAN-ggplot2 >= 3.1.0
Requires:         R-CRAN-Rcpp >= 1.0.0
Requires:         R-CRAN-dplyr >= 0.8.0.1
Requires:         R-stats 

%description
Set of functions that implement the PoDBAY method, described in the
publication 'A method to estimate probability of disease and vaccine
efficacy from clinical trial immunogenicity data' by Julie Dudasova,
Regina Laube, Chandni Valiathan, Matthew C. Wiener, Ferdous Gheyas, Pavel
Fiser, Justina Ivanauskaite, Frank Liu and Jeffrey R. Sachs (NPJ Vaccines,
2021), <doi:10.1038/s41541-021-00377-6>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}