%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  diyar
%global packver   0.5.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.5.1
Release:          1%{?dist}%{?buildtag}
Summary:          Record Linkage and Epidemiological Case Definitions in 'R'

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-methods 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-rlang 
Requires:         R-methods 
Requires:         R-utils 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-rlang 

%description
An R package for iterative and batched record linkage, and applying
epidemiological case definitions. 'diyar' can be used for deterministic
and probabilistic record linkage, or multistage record linkage combining
both approaches. It features the implementation of nested match criteria,
and mechanisms to address missing data and conflicting matches during
stepwise record linkage. Case definitions are implemented by assigning
records to groups based on match criteria such as person or place, and
overlapping time or duration of events e.g. sample collection dates or
periods of hospital stays. Matching records are assigned a unique group
ID. Index and duplicate records are removed or further analyses as
required.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}