Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c153' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7365879-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.72 PID: 14114 Logging PID: 14115 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 7365879, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ff341f4533f3f0f455b56d63cdf18e7f48179dc0', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bioseq', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-bioseq', 'package_version': '0.1.4-1.copr7365879', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '7365879-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bioseq /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bioseq', '/var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq'... Running: git checkout ff341f4533f3f0f455b56d63cdf18e7f48179dc0 -- cmd: ['git', 'checkout', 'ff341f4533f3f0f455b56d63cdf18e7f48179dc0', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq rc: 0 stdout: stderr: Note: switching to 'ff341f4533f3f0f455b56d63cdf18e7f48179dc0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ff341f4 automatic import of R-CRAN-bioseq Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bioseq_0.1.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o bioseq_0.1.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-bioseq/bioseq_0.1.4.tar.gz/md5/7fdcd24f230922484d291349909cd600/bioseq_0.1.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 692k 100 692k 0 0 8725k 0 --:--:-- --:--:-- --:--:-- 8767k INFO: Reading stdout from command: md5sum bioseq_0.1.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq/R-CRAN-bioseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714244544.768884 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq/R-CRAN-bioseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714244544.768884 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq/R-CRAN-bioseq.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1714244544.768884/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 149.4 KiB/s | 16.9 KiB | 00m00s Copr repository 100% | 7.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 14.8 MiB/s | 13.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.5-1.fc41 fedora 5.5 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 41-0.9 fedora 19.2 KiB findutils x86_64 1:4.9.0-8.fc40 fedora 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39.9000-16.fc41 fedora 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 288-1.fc41 fedora 183.3 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-2.fc41 fedora 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40-13.fc41 fedora 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc41 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.26-3.fc40 fedora 62.3 KiB ansible-srpm-macros noarch 1-15.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.1-1.fc41 fedora 327.3 KiB authselect x86_64 1.5.0-5.fc41 fedora 153.6 KiB authselect-libs x86_64 1.5.0-5.fc41 fedora 818.2 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.42.50-6.fc41 fedora 27.2 MiB binutils-gold x86_64 2.42.50-6.fc41 fedora 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 fedora 2.3 MiB coreutils-common x86_64 9.5-1.fc41 fedora 11.2 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20240320-1.git58e3d95.fc41 fedora 119.2 KiB curl x86_64 8.7.1-1.fc41 fedora 758.1 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-14.fc40 fedora 199.0 KiB dwz x86_64 0.15-6.fc40 fedora 290.9 KiB ed x86_64 1.20.2-1.fc41 fedora 146.8 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.191-7.fc41 fedora 2.5 MiB elfutils-debuginfod-client x86_64 0.191-7.fc41 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-7.fc41 fedora 1.8 KiB elfutils-libelf x86_64 0.191-7.fc41 fedora 1.2 MiB elfutils-libs x86_64 0.191-7.fc41 fedora 646.1 KiB fedora-gpg-keys noarch 41-0.1 fedora 125.0 KiB fedora-release noarch 41-0.9 fedora 0.0 B fedora-release-identity-basic noarch 41-0.9 fedora 694.0 B fedora-repos noarch 41-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 41-0.1 fedora 2.2 KiB file x86_64 5.45-5.fc41 fedora 103.5 KiB file-libs x86_64 5.45-5.fc41 fedora 9.9 MiB filesystem x86_64 3.18-9.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.3.1-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 14.2-5.fc41 fedora 12.7 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-1.fc41 fedora 747.0 B glibc x86_64 2.39.9000-16.fc41 fedora 6.7 MiB glibc-common x86_64 2.39.9000-16.fc41 fedora 1.0 MiB glibc-gconv-extra x86_64 2.39.9000-16.fc41 fedora 7.8 MiB gmp x86_64 1:6.3.0-1.fc41 fedora 803.4 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-1.fc41 fedora 60.8 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-23.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.2-5.fc40 fedora 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-3.fc41 fedora 914.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40-13.fc41 fedora 262.5 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc41 fedora 219.7 KiB libcap-ng x86_64 0.8.5-1.fc41 fedora 69.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.7.1-1.fc41 fedora 793.5 KiB libeconf x86_64 0.6.2-1.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40-13.fc41 fedora 362.9 KiB libffi x86_64 3.4.6-1.fc41 fedora 82.4 KiB libgcc x86_64 14.0.1-0.15.fc41 fedora 270.6 KiB libgomp x86_64 14.0.1-0.15.fc41 fedora 519.2 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40-13.fc41 fedora 351.8 KiB libnghttp2 x86_64 1.61.0-1.fc41 fedora 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.0-1.fc40 fedora 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.6-4.fc40 fedora 173.0 KiB libsemanage x86_64 3.6-3.fc40 fedora 293.5 KiB libsepol x86_64 3.6-3.fc40 fedora 802.0 KiB libsmartcols x86_64 2.40-13.fc41 fedora 180.4 KiB libssh x86_64 0.10.6-6.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-6.fc41 fedora 277.0 B libstdc++ x86_64 14.0.1-0.15.fc41 fedora 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.4-1.rc3.fc41 fedora 202.8 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40-13.fc41 fedora 37.4 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-5.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.6-1.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-1.fc41 fedora 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-3.fc40 fedora 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 fedora 112.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.1-6.fc41 fedora 7.8 MiB p11-kit x86_64 0.25.3-4.fc40 fedora 2.2 MiB p11-kit-trust x86_64 0.25.3-4.fc40 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.1-1.fc41 fedora 1.8 MiB pam-libs x86_64 1.6.1-1.fc41 fedora 135.0 KiB pcre2 x86_64 10.43-1.fc41 fedora 653.5 KiB pcre2-syntax noarch 10.43-1.fc41 fedora 249.0 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.0-1.fc40 fedora 82.4 KiB pkgconf-m4 noarch 2.1.0-1.fc40 fedora 13.9 KiB pkgconf-pkg-config x86_64 2.1.0-1.fc40 fedora 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 fedora 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 fedora 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 fedora 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 fedora 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.6.0-2.fc40 fedora 2.2 MiB rust-srpm-macros noarch 26.2-1.fc41 fedora 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.2-1.fc41 fedora 1.4 MiB systemd-libs x86_64 255.5-1.fc41 fedora 1.9 MiB util-linux-core x86_64 2.40-13.fc41 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 fedora 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc41 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.6-2.fc40 fedora 134.0 KiB zstd x86_64 1.5.6-1.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). 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Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. 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00m00s [117/155] Installing rpm-libs-0:4.19.1. 100% | 173.7 MiB/s | 711.4 KiB | 00m00s [118/155] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.4 KiB | 00m00s [119/155] Installing openldap-0:2.6.7-1 100% | 156.0 MiB/s | 638.9 KiB | 00m00s [120/155] Installing libcurl-0:8.7.1-1. 100% | 194.0 MiB/s | 794.6 KiB | 00m00s [121/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [122/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [123/155] Installing binutils-gold-0:2. 100% | 96.7 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 [124/155] Installing binutils-0:2.42.50 100% | 264.5 MiB/s | 27.2 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 [125/155] Installing elfutils-0:0.191-7 100% | 212.7 MiB/s | 2.6 MiB | 00m00s 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100% | 46.3 MiB/s | 189.7 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 35.5 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 1.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 84.9 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 274.9 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.x86_64 elfutils-debuginfod-client-0.191-7.fc41.x86_64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.x86_64 elfutils-libs-0.191-7.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-5.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.x86_64 glibc-common-2.39.9000-16.fc41.x86_64 glibc-gconv-extra-2.39.9000-16.fc41.x86_64 glibc-minimal-langpack-2.39.9000-16.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch gpg-pubkey-a15b79cc-63d04c2c gpg-pubkey-e99d6ad1-64d2612c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.5-1.fc41.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.15.fc41.x86_64 libgomp-14.0.1-0.15.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.x86_64 pam-libs-1.6.1-1.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-1.fc41.x86_64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.x86_64 sqlite-libs-3.45.2-1.fc41.x86_64 systemd-libs-255.5-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc41.x86_64 util-linux-core-2.40-13.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc41.x86_64 xz-libs-5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1714244544.768884/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1714244544.768884/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-iqswwixn/R-CRAN-bioseq/R-CRAN-bioseq.spec) Config(child) 0 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1714244544.768884/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm Start: build setup for R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Updating and loading repositories: fedora 100% | 5.0 KiB/s | 16.9 KiB | 00m03s Copr repository 100% | 5.7 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 16.5 MiB/s | 13.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-ape x86_64 5.8-1.fc41.copr7356134 copr_base 4.3 MiB R-CRAN-crayon noarch 1.5.2-1.fc41.copr7349942 copr_base 232.3 KiB R-CRAN-dplyr x86_64 1.1.4-1.fc41.copr7361225 copr_base 2.6 MiB R-CRAN-pillar noarch 1.9.0-1.fc41.copr7357931 copr_base 1.4 MiB R-CRAN-readr x86_64 2.1.5-1.fc41.copr7362418 copr_base 1.4 MiB R-CRAN-rlang x86_64 1.1.3-1.fc41.copr7349924 copr_base 2.6 MiB R-CRAN-stringdist x86_64 0.9.12-1.fc41.copr7350072 copr_base 832.2 KiB R-CRAN-stringi x86_64 1.8.3-1.fc41.copr7349950 copr_base 2.0 MiB R-CRAN-stringr noarch 1.5.1-1.fc41.copr7357924 copr_base 646.8 KiB R-CRAN-tibble x86_64 3.2.1-1.fc41.copr7359525 copr_base 1.7 MiB R-CRAN-vctrs x86_64 0.6.5-1.fc41.copr7356070 copr_base 2.3 MiB R-core x86_64 4.4.0-1.fc41~bootstrap copr_base 100.5 MiB R-devel x86_64 4.4.0-1.fc41~bootstrap copr_base 0.0 B Installing dependencies: R-CRAN-R6 noarch 2.5.1-1.fc41.copr7349938 copr_base 115.9 KiB R-CRAN-Rcpp x86_64 1.0.12-1.fc41.copr7349917 copr_base 8.3 MiB R-CRAN-bit x86_64 4.0.5-1.fc41.copr7349969 copr_base 1.5 MiB R-CRAN-bit64 x86_64 4.0.5-1.fc41.copr7353647 copr_base 888.0 KiB R-CRAN-cli x86_64 3.6.2-1.fc41.copr7349961 copr_base 2.4 MiB R-CRAN-clipr noarch 0.8.0-1.fc41.copr7349958 copr_base 85.0 KiB R-CRAN-digest x86_64 0.6.35-1.fc41.copr7349925 copr_base 484.1 KiB R-CRAN-fansi x86_64 1.0.6-1.fc41.copr7349952 copr_base 625.8 KiB R-CRAN-generics noarch 0.1.3-1.fc41.copr7350006 copr_base 160.2 KiB R-CRAN-glue x86_64 1.7.0-1.fc41.copr7349919 copr_base 261.2 KiB R-CRAN-hms noarch 1.1.3-1.fc41.copr7357932 copr_base 132.4 KiB R-CRAN-lattice x86_64 0.22.6-1.fc41.copr7352639 copr_base 2.0 MiB R-CRAN-lifecycle noarch 1.0.4-1.fc41.copr7354340 copr_base 282.7 KiB R-CRAN-magrittr x86_64 2.0.3-1.fc41.copr7349936 copr_base 417.3 KiB R-CRAN-nlme x86_64 3.1.164-1.fc41.copr7355272 copr_base 3.8 MiB R-CRAN-pkgconfig noarch 2.0.3-3.fc41.copr7349937 copr_base 34.0 KiB R-CRAN-tidyselect noarch 1.2.1-1.fc41.copr7357928 copr_base 433.3 KiB R-CRAN-tzdb x86_64 0.4.0-1.fc41.copr7355368 copr_base 2.1 MiB R-CRAN-utf8 x86_64 1.2.4-1.fc41.copr7349954 copr_base 470.9 KiB R-CRAN-vroom x86_64 1.6.5-1.fc41.copr7361506 copr_base 1.7 MiB R-CRAN-withr noarch 3.0.0-1.fc41.copr7349929 copr_base 420.0 KiB R-core-devel x86_64 4.4.0-1.fc41~bootstrap copr_base 394.1 KiB R-java x86_64 4.4.0-1.fc41~bootstrap copr_base 0.0 B R-java-devel x86_64 4.4.0-1.fc41~bootstrap copr_base 0.0 B R-littler x86_64 0.3.19-3.fc40 fedora 189.7 KiB R-rpm-macros noarch 1.2.1-9.fc40 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-12.fc40 fedora 192.7 KiB alsa-lib x86_64 1.2.11-2.fc40 fedora 1.4 MiB annobin-docs noarch 12.52-1.fc41 fedora 96.2 KiB annobin-plugin-gcc x86_64 12.52-1.fc41 fedora 971.6 KiB avahi-libs x86_64 0.8-26.fc40 fedora 166.3 KiB brotli x86_64 1.1.0-3.fc40 fedora 31.8 KiB brotli-devel x86_64 1.1.0-3.fc40 fedora 65.6 KiB bzip2-devel x86_64 1.0.8-18.fc40 fedora 309.8 KiB cairo x86_64 1.18.0-3.fc40 fedora 1.7 MiB cairo-devel x86_64 1.18.0-3.fc40 fedora 2.3 MiB cmake-filesystem x86_64 3.28.3-4.fc41 fedora 0.0 B copy-jdk-configs noarch 4.1-5.fc40 fedora 20.3 KiB cpp x86_64 14.0.1-0.15.fc41 fedora 34.9 MiB crypto-policies-scripts noarch 20240320-1.git58e3d95.fc41 fedora 323.2 KiB cups-libs x86_64 1:2.4.7-13.fc41 fedora 618.8 KiB dbus-libs x86_64 1:1.14.10-3.fc40 fedora 368.9 KiB default-fonts-core-sans noarch 4.0-13.fc41 fedora 11.9 KiB desktop-file-utils x86_64 0.26-12.fc40 fedora 226.0 KiB emacs-filesystem noarch 1:30.0-2.fc41 fedora 0.0 B expat x86_64 2.6.2-1.fc41 fedora 280.8 KiB flexiblas x86_64 3.4.2-1.fc41 fedora 46.9 KiB flexiblas-devel x86_64 3.4.2-1.fc41 fedora 4.7 MiB flexiblas-netlib x86_64 3.4.2-1.fc41 fedora 10.4 MiB flexiblas-netlib64 x86_64 3.4.2-1.fc41 fedora 10.5 MiB flexiblas-openblas-openmp x86_64 3.4.2-1.fc41 fedora 39.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc41 fedora 39.3 KiB fontconfig x86_64 2.15.0-4.fc40 fedora 767.3 KiB fontconfig-devel x86_64 2.15.0-4.fc40 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-14.fc40 fedora 0.0 B freetype x86_64 2.13.2-5.fc40 fedora 842.6 KiB freetype-devel x86_64 2.13.2-5.fc40 fedora 7.8 MiB fribidi x86_64 1.0.13-4.fc40 fedora 365.3 KiB gc x86_64 8.2.2-6.fc40 fedora 258.7 KiB gcc x86_64 14.0.1-0.15.fc41 fedora 103.9 MiB gcc-c++ x86_64 14.0.1-0.15.fc41 fedora 38.1 MiB gcc-gfortran x86_64 14.0.1-0.15.fc41 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.0.1-0.15.fc41 fedora 57.1 KiB gettext x86_64 0.22.5-2.fc41 fedora 5.2 MiB gettext-envsubst x86_64 0.22.5-2.fc41 fedora 74.9 KiB gettext-libs x86_64 0.22.5-2.fc41 fedora 1.7 MiB gettext-runtime x86_64 0.22.5-2.fc41 fedora 481.3 KiB glib2 x86_64 2.80.0-1.fc41 fedora 14.4 MiB glib2-devel x86_64 2.80.0-1.fc41 fedora 15.4 MiB glibc-devel x86_64 2.39.9000-16.fc41 fedora 36.7 KiB glibc-headers-x86 noarch 2.39.9000-16.fc41 fedora 2.2 MiB gnutls x86_64 3.8.5-1.fc41 fedora 3.2 MiB google-noto-fonts-common noarch 20240401-1.fc41 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240401-1.fc41 fedora 1.2 MiB graphite2 x86_64 1.3.14-15.fc40 fedora 192.0 KiB graphite2-devel x86_64 1.3.14-15.fc40 fedora 49.1 KiB groff-base x86_64 1.23.0-6.fc40 fedora 3.8 MiB guile30 x86_64 3.0.7-12.fc40 fedora 51.5 MiB harfbuzz x86_64 8.4.0-1.fc41 fedora 2.6 MiB harfbuzz-devel x86_64 8.4.0-1.fc41 fedora 5.1 MiB harfbuzz-icu x86_64 8.4.0-1.fc41 fedora 15.5 KiB java-21-openjdk x86_64 1:21.0.2.0.13-3.fc41 fedora 1.1 MiB java-21-openjdk-devel x86_64 1:21.0.2.0.13-3.fc41 fedora 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.2.0.13-3.fc41 fedora 204.9 MiB javapackages-filesystem noarch 6.2.0-9.fc41 fedora 1.9 KiB jbigkit-libs x86_64 2.1-29.fc40 fedora 117.6 KiB kernel-headers x86_64 6.9.0-0.rc5.44.fc41 fedora 6.3 MiB libICE x86_64 1.1.1-3.fc40 fedora 181.2 KiB libRmath x86_64 4.4.0-1.fc41~bootstrap copr_base 242.8 KiB libRmath-devel x86_64 4.4.0-1.fc41~bootstrap copr_base 17.4 KiB libSM x86_64 1.2.4-3.fc40 fedora 97.3 KiB libX11 x86_64 1.8.9-1.fc41 fedora 1.3 MiB libX11-common noarch 1.8.9-1.fc41 fedora 1.1 MiB libX11-devel x86_64 1.8.9-1.fc41 fedora 1.0 MiB libX11-xcb x86_64 1.8.9-1.fc41 fedora 15.0 KiB libXau x86_64 1.0.11-6.fc40 fedora 66.9 KiB libXau-devel x86_64 1.0.11-6.fc40 fedora 6.4 KiB libXcomposite x86_64 0.4.6-3.fc40 fedora 44.5 KiB libXext x86_64 1.3.6-1.fc40 fedora 90.1 KiB libXext-devel x86_64 1.3.6-1.fc40 fedora 98.9 KiB libXft x86_64 2.3.8-6.fc40 fedora 164.5 KiB libXft-devel x86_64 2.3.8-6.fc40 fedora 31.7 KiB libXi x86_64 1.8.1-5.fc40 fedora 80.7 KiB libXmu x86_64 1.2.1-1.fc41 fedora 187.5 KiB libXrender x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXt x86_64 1.3.0-3.fc40 fedora 425.9 KiB libXtst x86_64 1.2.4-6.fc40 fedora 33.6 KiB libb2 x86_64 0.98.1-11.fc40 fedora 42.2 KiB libblkid-devel x86_64 2.40-13.fc41 fedora 44.9 KiB libdatrie x86_64 0.2.13-9.fc40 fedora 57.9 KiB libffi-devel x86_64 3.4.6-1.fc41 fedora 33.1 KiB libfontenc x86_64 1.1.8-1.fc41 fedora 67.0 KiB libgfortran x86_64 14.0.1-0.15.fc41 fedora 2.9 MiB libicu x86_64 74.2-1.fc40 fedora 34.9 MiB libicu-devel x86_64 74.2-1.fc40 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-2.fc41 fedora 772.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libmount-devel x86_64 2.40-13.fc41 fedora 63.5 KiB libmpc x86_64 1.3.1-5.fc40 fedora 164.7 KiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libpng-devel x86_64 2:1.6.40-3.fc40 fedora 881.5 KiB libquadmath x86_64 14.0.1-0.15.fc41 fedora 325.9 KiB libquadmath-devel x86_64 14.0.1-0.15.fc41 fedora 21.8 KiB libselinux-devel x86_64 3.6-4.fc40 fedora 126.1 KiB libsepol-devel x86_64 3.6-3.fc40 fedora 120.2 KiB libstdc++-devel x86_64 14.0.1-0.15.fc41 fedora 15.4 MiB libtextstyle x86_64 0.22.5-2.fc41 fedora 195.6 KiB libthai x86_64 0.1.29-8.fc40 fedora 783.5 KiB libtiff x86_64 4.6.0-2.fc40 fedora 1.1 MiB libtirpc-devel x86_64 1.3.4-1.rc3.fc41 fedora 251.6 KiB libwebp x86_64 1.4.0-1.fc41 fedora 802.7 KiB libxcb x86_64 1.17.0-1.fc41 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-1.fc41 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.36-5.fc40 fedora 30.3 KiB libxml2-devel x86_64 2.12.6-1.fc41 fedora 3.4 MiB lksctp-tools x86_64 1.0.19-6.fc40 fedora 269.6 KiB lua x86_64 5.4.6-5.fc40 fedora 597.8 KiB lua-posix x86_64 36.2.1-6.fc40 fedora 599.7 KiB make x86_64 1:4.4.1-6.fc40 fedora 1.8 MiB mkfontscale x86_64 1.2.2-6.fc40 fedora 49.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB ncurses x86_64 6.4-12.20240127.fc40 fedora 621.0 KiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB nspr x86_64 4.35.0-22.fc41 fedora 312.7 KiB nss x86_64 3.99.0-1.fc41 fedora 1.9 MiB nss-softokn x86_64 3.99.0-1.fc41 fedora 1.9 MiB nss-softokn-freebl x86_64 3.99.0-1.fc41 fedora 896.6 KiB nss-sysinit x86_64 3.99.0-1.fc41 fedora 18.2 KiB nss-util x86_64 3.99.0-1.fc41 fedora 226.1 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openblas-openmp64 x86_64 0.3.26-4.fc40 fedora 39.1 MiB pango x86_64 1.52.2-1.fc41 fedora 995.8 KiB pcre2-devel x86_64 10.43-1.fc41 fedora 2.0 MiB pcre2-utf16 x86_64 10.43-1.fc41 fedora 590.1 KiB pcre2-utf32 x86_64 10.43-1.fc41 fedora 557.9 KiB perl-AutoLoader noarch 5.74-507.fc41 fedora 20.5 KiB perl-B x86_64 1.88-507.fc41 fedora 492.4 KiB perl-Carp noarch 1.54-502.fc40 fedora 46.5 KiB perl-Class-Struct noarch 0.68-507.fc41 fedora 25.4 KiB perl-Data-Dumper x86_64 2.188-503.fc40 fedora 111.7 KiB perl-Digest noarch 1.20-502.fc40 fedora 35.2 KiB perl-Digest-MD5 x86_64 2.59-3.fc40 fedora 59.7 KiB perl-DynaLoader x86_64 1.54-507.fc41 fedora 32.1 KiB perl-Encode x86_64 4:3.21-505.fc41 fedora 4.7 MiB perl-Errno x86_64 1.37-507.fc41 fedora 8.4 KiB perl-Exporter noarch 5.78-3.fc40 fedora 54.2 KiB perl-Fcntl x86_64 1.15-507.fc41 fedora 24.6 KiB perl-File-Basename noarch 2.86-507.fc41 fedora 14.0 KiB perl-File-Path noarch 2.18-503.fc40 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-503.fc40 fedora 162.3 KiB perl-File-stat noarch 1.13-507.fc41 fedora 12.7 KiB perl-FileHandle noarch 2.05-507.fc41 fedora 9.3 KiB perl-Getopt-Long noarch 1:2.57-3.fc40 fedora 144.1 KiB perl-Getopt-Std noarch 1.13-507.fc41 fedora 11.1 KiB perl-HTTP-Tiny noarch 0.088-5.fc40 fedora 152.1 KiB perl-IO x86_64 1.52-507.fc41 fedora 151.0 KiB perl-IO-Socket-IP noarch 0.42-2.fc40 fedora 98.6 KiB perl-IO-Socket-SSL noarch 2.085-1.fc40 fedora 685.0 KiB perl-IPC-Open3 noarch 1.22-507.fc41 fedora 22.5 KiB perl-MIME-Base64 x86_64 3.16-503.fc40 fedora 46.1 KiB perl-Mozilla-CA noarch 20240313-1.fc41 fedora 9.5 KiB perl-Net-SSLeay x86_64 1.94-3.fc40 fedora 1.3 MiB perl-POSIX x86_64 2.13-507.fc41 fedora 229.0 KiB perl-PathTools x86_64 3.89-502.fc40 fedora 179.6 KiB perl-Pod-Escapes noarch 1:1.07-503.fc40 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-503.fc40 fedora 163.1 KiB perl-Pod-Simple noarch 1:3.45-6.fc40 fedora 559.8 KiB perl-Pod-Usage noarch 4:2.03-503.fc40 fedora 84.7 KiB perl-Scalar-List-Utils x86_64 5:1.63-503.fc40 fedora 145.5 KiB perl-SelectSaver noarch 1.02-507.fc41 fedora 2.2 KiB perl-Socket x86_64 4:2.038-1.fc41 fedora 124.0 KiB perl-Storable x86_64 1:3.32-502.fc40 fedora 232.3 KiB perl-Symbol noarch 1.09-507.fc41 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-504.fc40 fedora 97.5 KiB perl-Term-Cap noarch 1.18-503.fc40 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-502.fc40 fedora 13.5 KiB perl-Text-Tabs+Wrap noarch 2024.001-1.fc41 fedora 22.5 KiB perl-Time-Local noarch 2:1.350-5.fc40 fedora 68.9 KiB perl-URI noarch 5.28-1.fc41 fedora 240.2 KiB perl-base noarch 2.27-507.fc41 fedora 12.5 KiB perl-constant noarch 1.33-503.fc40 fedora 26.2 KiB perl-if noarch 0.61.000-507.fc41 fedora 5.8 KiB perl-interpreter x86_64 4:5.38.2-507.fc41 fedora 119.8 KiB perl-libnet noarch 3.15-503.fc40 fedora 289.0 KiB perl-libs x86_64 4:5.38.2-507.fc41 fedora 9.8 MiB perl-locale noarch 1.10-507.fc41 fedora 6.2 KiB perl-mro x86_64 1.28-507.fc41 fedora 41.6 KiB perl-overload noarch 1.37-507.fc41 fedora 71.5 KiB perl-overloading noarch 0.02-507.fc41 fedora 4.8 KiB perl-parent noarch 1:0.241-502.fc40 fedora 9.7 KiB perl-podlators noarch 1:5.01-502.fc40 fedora 308.1 KiB perl-vars noarch 1.05-507.fc41 fedora 3.9 KiB pixman x86_64 0.43.4-1.fc41 fedora 710.1 KiB pixman-devel x86_64 0.43.4-1.fc41 fedora 49.4 KiB python-pip-wheel noarch 24.0-2.fc41 fedora 1.5 MiB python3 x86_64 3.12.3-2.fc41 fedora 31.5 KiB python3-libs x86_64 3.12.3-2.fc41 fedora 40.9 MiB python3-packaging noarch 24.0-1.fc41 fedora 424.8 KiB sysprof-capture-devel x86_64 46.0-1.fc41 fedora 252.8 KiB tcl x86_64 1:8.6.14-1.fc41 fedora 4.2 MiB tcl-devel x86_64 1:8.6.14-1.fc41 fedora 791.4 KiB tk x86_64 1:8.6.14-1.fc41 fedora 3.6 MiB tk-devel x86_64 1:8.6.14-1.fc41 fedora 985.0 KiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 fedora 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 fedora 122.7 KiB tzdata noarch 2024a-5.fc41 fedora 1.6 MiB tzdata-java noarch 2024a-5.fc41 fedora 101.7 KiB xclip x86_64 0.13-21.git11cba61.fc40 fedora 62.4 KiB xdg-utils noarch 1.2.1-1.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-1.fc41 fedora 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc41 fedora 255.8 KiB zlib-ng-compat-devel x86_64 2.1.6-2.fc40 fedora 103.4 KiB Transaction Summary: Installing: 251 packages Total size of inbound packages is 310 MiB. Need to download 18 MiB. After this operation 988 MiB will be used (install 988 MiB, remove 0 B). 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Stop pre-transaction scriptlet: crypto-policies-scripts-0:20240320-1.git58e3 >>> Running pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3. >>> Stop pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3.fc4 [ 2/253] Prepare transaction 100% | 789.0 B/s | 251.0 B | 00m00s [ 3/253] Installing zlib-ng-compat-dev 100% | 102.0 MiB/s | 104.5 KiB | 00m00s [ 4/253] Installing nspr-0:4.35.0-22.f 100% | 102.4 MiB/s | 314.5 KiB | 00m00s [ 5/253] Installing xorg-x11-proto-dev 100% | 137.1 MiB/s | 1.8 MiB | 00m00s [ 6/253] Installing libgfortran-0:14.0 100% | 294.3 MiB/s | 2.9 MiB | 00m00s [ 7/253] Installing nss-util-0:3.99.0- 100% | 110.9 MiB/s | 227.1 KiB | 00m00s [ 8/253] Installing libmpc-0:1.3.1-5.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 9/253] Installing libquadmath-0:14.0 100% | 159.8 MiB/s | 327.2 KiB | 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openblas-openmp-0: 100% | 457.7 MiB/s | 38.9 MiB | 00m00s [ 36/253] Installing openblas-openmp64- 100% | 471.0 MiB/s | 39.1 MiB | 00m00s [ 37/253] Installing flexiblas-netlib64 100% | 328.5 MiB/s | 10.5 MiB | 00m00s [ 38/253] Installing flexiblas-openblas 100% | 39.2 MiB/s | 40.2 KiB | 00m00s [ 39/253] Installing flexiblas-0:3.4.2- 100% | 47.0 MiB/s | 48.1 KiB | 00m00s [ 40/253] Installing flexiblas-openblas 100% | 39.2 MiB/s | 40.2 KiB | 00m00s [ 41/253] Installing flexiblas-netlib-0 100% | 315.2 MiB/s | 10.4 MiB | 00m00s [ 42/253] Installing flexiblas-devel-0: 100% | 424.3 MiB/s | 4.7 MiB | 00m00s [ 43/253] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 44/253] Installing cpp-0:14.0.1-0.15. 100% | 317.7 MiB/s | 35.0 MiB | 00m00s [ 45/253] Installing nss-softokn-freebl 100% | 219.4 MiB/s | 898.7 KiB | 00m00s [ 46/253] Installing nss-softokn-0:3.99 100% | 265.8 MiB/s | 1.9 MiB | 00m00s [ 47/253] Installing ncurses-0:6.4-12.2 100% | 29.2 MiB/s | 627.6 KiB | 00m00s >>> Running pre-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 >>> Stop pre-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 [ 48/253] Installing groff-base-0:1.23. 100% | 101.5 MiB/s | 3.9 MiB | 00m00s >>> Running post-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 >>> Stop post-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 [ 49/253] Installing perl-Digest-0:1.20 100% | 36.1 MiB/s | 37.0 KiB | 00m00s [ 50/253] Installing perl-B-0:1.88-507. 100% | 161.4 MiB/s | 495.7 KiB | 00m00s [ 51/253] Installing perl-FileHandle-0: 100% | 9.5 MiB/s | 9.8 KiB | 00m00s [ 52/253] Installing perl-Digest-MD5-0: 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [ 53/253] Installing perl-Data-Dumper-0 100% | 55.4 MiB/s | 113.6 KiB | 00m00s [ 54/253] Installing perl-libnet-0:3.15 100% | 95.8 MiB/s | 294.3 KiB | 00m00s [ 55/253] Installing perl-AutoLoader-0: 100% | 20.5 MiB/s | 20.9 KiB | 00m00s [ 56/253] Installing perl-URI-0:5.28-1. 100% | 49.2 MiB/s | 251.8 KiB | 00m00s [ 57/253] 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104.0 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch [158/253] Installing gcc-c++-0:14.0.1-0 100% | 315.0 MiB/s | 38.1 MiB | 00m00s [159/253] Installing libquadmath-devel- 100% | 11.3 MiB/s | 23.2 KiB | 00m00s [160/253] Installing gcc-gfortran-0:14. 100% | 312.5 MiB/s | 37.2 MiB | 00m00s [161/253] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [162/253] Installing libdatrie-0:0.2.13 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [163/253] Installing libthai-0:0.1.29-8 100% | 255.6 MiB/s | 785.3 KiB | 00m00s [164/253] Installing nettle-0:3.9.1-6.f 100% | 193.7 MiB/s | 793.3 KiB | 00m00s [165/253] Installing gnutls-0:3.8.5-1.f 100% | 246.1 MiB/s | 3.2 MiB | 00m00s [166/253] Installing glib2-0:2.80.0-1.f 100% | 273.1 MiB/s | 14.5 MiB | 00m00s [167/253] Installing desktop-file-utils 100% | 74.8 MiB/s | 229.8 KiB | 00m00s [168/253] Installing xdg-utils-0:1.2.1- 100% | 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R-CRAN-tidyselect- 100% | 73.0 MiB/s | 448.2 KiB | 00m00s [213/253] Installing R-CRAN-lattice-0:0 100% | 86.7 MiB/s | 2.1 MiB | 00m00s [214/253] Installing R-CRAN-nlme-0:3.1. 100% | 90.7 MiB/s | 3.9 MiB | 00m00s [215/253] Installing R-CRAN-stringi-0:1 100% | 94.2 MiB/s | 2.1 MiB | 00m00s [216/253] Installing R-CRAN-utf8-0:1.2. 100% | 93.7 MiB/s | 479.5 KiB | 00m00s [217/253] Installing R-CRAN-pillar-0:1. 100% | 130.6 MiB/s | 1.4 MiB | 00m00s [218/253] Installing R-CRAN-tibble-0:3. 100% | 131.0 MiB/s | 1.7 MiB | 00m00s [219/253] Installing R-CRAN-generics-0: 100% | 28.9 MiB/s | 177.5 KiB | 00m00s [220/253] Installing R-CRAN-clipr-0:0.8 100% | 22.6 MiB/s | 92.7 KiB | 00m00s [221/253] Installing R-rpm-macros-0:1.2 100% | 6.4 MiB/s | 6.6 KiB | 00m00s [222/253] Installing R-littler-0:0.3.19 100% | 38.3 MiB/s | 196.0 KiB | 00m00s [223/253] Installing R-CRAN-Rcpp-0:1.0. 100% | 143.6 MiB/s | 8.5 MiB | 00m00s [224/253] Installing R-java-0:4.4.0-1.f 100% | 0.0 B/s | 124.0 B | 00m00s [225/253] Installing R-CRAN-tzdb-0:0.4. 100% | 178.3 MiB/s | 2.1 MiB | 00m00s [226/253] Installing R-CRAN-bit-0:4.0.5 100% | 84.0 MiB/s | 1.6 MiB | 00m00s [227/253] Installing R-CRAN-bit64-0:4.0 100% | 57.4 MiB/s | 940.4 KiB | 00m00s [228/253] Installing R-CRAN-vroom-0:1.6 100% | 96.3 MiB/s | 1.7 MiB | 00m00s [229/253] Installing R-CRAN-digest-0:0. 100% | 61.0 MiB/s | 499.7 KiB | 00m00s [230/253] Installing libXext-devel-0:1. 100% | 27.1 MiB/s | 110.9 KiB | 00m00s [231/253] Installing mkfontscale-0:1.2. 100% | 49.4 MiB/s | 50.6 KiB | 00m00s [232/253] Installing ttmkfdir-0:3.0.9-7 100% | 60.4 MiB/s | 123.8 KiB | 00m00s [233/253] Installing xorg-x11-fonts-Typ 100% | 14.8 MiB/s | 865.6 KiB | 00m00s >>> Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch >>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch [234/253] Installing harfbuzz-icu-0:8.4 100% | 8.0 MiB/s | 16.3 KiB | 00m00s [235/253] Installing fontconfig-devel-0 100% | 16.5 MiB/s | 151.9 KiB | 00m00s [236/253] Installing cairo-devel-0:1.18 100% | 229.1 MiB/s | 2.3 MiB | 00m00s [237/253] Installing freetype-devel-0:2 100% | 253.4 MiB/s | 7.9 MiB | 00m00s [238/253] Installing harfbuzz-devel-0:8 100% | 244.8 MiB/s | 5.1 MiB | 00m00s [239/253] Installing libXft-devel-0:2.3 100% | 10.8 MiB/s | 44.3 KiB | 00m00s [240/253] Installing tk-devel-1:8.6.14- 100% | 91.9 MiB/s | 1.0 MiB | 00m00s [241/253] Installing R-core-devel-0:4.4 100% | 97.8 MiB/s | 400.7 KiB | 00m00s [242/253] Installing libXcomposite-0:0. 100% | 45.0 MiB/s | 46.1 KiB | 00m00s [243/253] Installing java-21-openjdk-1: 100% | 55.1 MiB/s | 1.1 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.x86_64 >>> Stop post-install scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.x86_64 [244/253] Installing java-21-openjdk-de 100% | 261.4 MiB/s | 11.2 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc41.x >>> Stop post-install scriptlet: 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scriptlet: redhat-rpm-config-0:288-1.fc41.noarch >>> Running post-transaction scriptlet: crypto-policies-scripts-0:20240320-1.git >>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20240320-1.git58e >>> Running post-transaction scriptlet: nss-0:3.99.0-1.fc41.x86_64 >>> Stop post-transaction scriptlet: nss-0:3.99.0-1.fc41.x86_64 >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3 >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3.fc >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.x86 >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc41. >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 Warning: skipped PGP checks for 39 package(s). Finish: build setup for R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm Start: rpmbuild R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Tah1WK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bioseq + /usr/bin/mkdir -p bioseq + cd bioseq + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bioseq_0.1.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/bioseq-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bioseq-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d bioseq/src ']' + true + '[' -d bioseq/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.CC533e + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioseq + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JyOna2 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioseq + mkdir -p /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64/usr/local/lib/R/library bioseq * installing *source* package ‘bioseq’ ... ** package ‘bioseq’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘bioseq’ finding HTML links ... done aa html aliview html alphabets html as-tibble-ape html as-tibble-bioseq html as_AAbin html as_AAbin.tbl_df html as_DNAbin html as_DNAbin.tbl_df html as_aa html as_dna html as_rna html as_seqinr_alignment html bioseq-package html dic_genetic_codes html dna html fragilaria html genetic-codes html internal-methods html is_aa html is_dna html is_rna html new_aa html new_dna html new_rna html pillar_shaft.bioseq_aa html pillar_shaft.bioseq_dna html pillar_shaft.bioseq_rna html read_fasta html rev_complement html rna html seaview html seq-replace html seq_cluster html seq_combine html seq_consensus html seq_count_pattern html seq_crop_pattern html seq_crop_position html seq_detect_pattern html seq_disambiguate_IUPAC html seq_extract_pattern html seq_extract_position html seq_nchar html seq_nseq html seq_remove_pattern html seq_remove_position html seq_replace_position html seq_rev_translate html seq_spellout html seq_split_kmer html seq_split_pattern html seq_stat_gc html seq_stat_prop html seq_translate html transcription html validate_seq html write_fasta html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bioseq) + test -d bioseq/src + rm -f /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.4-1.fc41.copr7365879 --unique-debug-suffix -0.1.4-1.fc41.copr7365879.x86_64 --unique-debug-src-base R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bioseq find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.noarch Provides: R-CRAN-bioseq = 0.1.4-1.fc41.copr7365879 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.AflCym + umask 022 + cd /builddir/build/BUILD + cd bioseq + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.SlSora + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bioseq-SPECPARTS + rm -rf bioseq bioseq.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm Finish: build phase for R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1714244544.768884/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-bioseq-0.1.4-1.fc41.copr7365879.src.rpm) Config(child) 0 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-bioseq", "epoch": null, "version": "0.1.4", "release": "1.fc41.copr7365879", "arch": "src" }, { "name": "R-CRAN-bioseq", "epoch": null, "version": "0.1.4", "release": "1.fc41.copr7365879", "arch": "noarch" } ] } RPMResults finished