%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  rgm
%global packver   1.0.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.4
Release:          1%{?dist}%{?buildtag}
Summary:          Advanced Inference with Random Graphical Models

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-truncnorm 
BuildRequires:    R-CRAN-BDgraph 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-huge 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-pROC 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-Rcpp 
Requires:         R-CRAN-truncnorm 
Requires:         R-CRAN-BDgraph 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-huge 
Requires:         R-CRAN-ggplot2 
Requires:         R-stats 
Requires:         R-CRAN-pROC 
Requires:         R-CRAN-reshape2 

%description
Implements state-of-the-art Random Graphical Models (RGMs) for
multivariate data analysis across multiple environments, offering tools
for exploring network interactions and structural relationships.
Capabilities include joint inference across environments, integration of
external covariates, and a Bayesian framework for uncertainty
quantification. Applicable in various fields, including microbiome
analysis. Methods based on Vinciotti, V., Wit, E., & Richter, F. (2023).
"Random Graphical Model of Microbiome Interactions in Related
Environments." <arXiv:2304.01956>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}