%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  gllvm
%global packver   1.4.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.4.3
Release:          1%{?dist}%{?buildtag}
Summary:          Generalized Linear Latent Variable Models

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-TMB 
BuildRequires:    R-CRAN-mvabund 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-statmod 
BuildRequires:    R-CRAN-fishMod 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-alabama 
BuildRequires:    R-CRAN-nloptr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-RcppEigen 
Requires:         R-CRAN-TMB 
Requires:         R-CRAN-mvabund 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-statmod 
Requires:         R-CRAN-fishMod 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-alabama 
Requires:         R-CRAN-nloptr 
Requires:         R-methods 

%description
Analysis of multivariate data using generalized linear latent variable
models (gllvm). Estimation is performed using either Laplace approximation
method or variational approximation method implemented via TMB (Kristensen
et al., (2016), <doi:10.18637/jss.v070.i05>). For details see Niku et al.
(2019a) <doi:10.1371/journal.pone.0216129> and Niku et al. (2019b)
<doi:10.1111/2041-210X.13303>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}