calc_sc3_stability {clustree}R Documentation

Calculate SC3 stability

Description

Calculate the SC3 stability index for every cluster at every resolution in a set of clusterings. The index varies from 0 to 1, where 1 suggests that a cluster is more stable across resolutions. See calc_sc3_stability_cluster() for more details.

Usage

calc_sc3_stability(clusterings)

Arguments

clusterings

numeric matrix containing clustering information, each column contains clustering at a separate resolution

Value

matrix with stability score for each cluster


[Package clustree version 0.5.1 Index]