%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  pCODE
%global packver   0.9.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.9.4
Release:          1%{?dist}%{?buildtag}
Summary:          Estimation of an Ordinary Differential Equation Model by Parameter Cascade Method

License:          GPL
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-fda 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-deSolve 
BuildRequires:    R-stats 
Requires:         R-CRAN-fda 
Requires:         R-CRAN-pracma 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-deSolve 
Requires:         R-stats 

%description
An implementation of the parameter cascade method in Ramsay, J. O.,
Hooker,G., Campbell, D., and Cao, J. (2007) for estimating ordinary
differential equation models with missing or complete observations. It
combines smoothing method and profile estimation to estimate any
non-linear dynamic system. The package also offers variance estimates for
parameters of interest based on either bootstrap or Delta method.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}