%global __brp_check_rpaths %{nil}
%global packname  metaprotr
%global packver   1.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Metaproteomics Post-Processing Analysis

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-ade4 
BuildRequires:    R-CRAN-dendextend 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggforce 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyverse 
Requires:         R-CRAN-ade4 
Requires:         R-CRAN-dendextend 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggforce 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyverse 

%description
Set of tools for descriptive analysis of metaproteomics data generated
from high-throughput mass spectrometry instruments. These tools allow to
cluster peptides and proteins abundance, expressed as spectral counts, and
to manipulate them in groups of metaproteins. This information can be
represented using multiple visualization functions to portray the global
metaproteome landscape and to differentiate samples or conditions, in
terms of abundance of metaproteins, taxonomic levels and/or functional
annotation. The provided tools allow to implement flexible analytical
pipelines that can be easily applied to studies interested in
metaproteomics analysis.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}