%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mispitools
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Missing Person Identification Tools

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-forrel 
BuildRequires:    R-CRAN-pedtools 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-highcharter 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tidyverse 
BuildRequires:    R-CRAN-DirichletReg 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-shiny 
Requires:         R-CRAN-forrel 
Requires:         R-CRAN-pedtools 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-highcharter 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tidyverse 
Requires:         R-CRAN-DirichletReg 
Requires:         R-stats 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-reshape2 
Requires:         R-graphics 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-shiny 

%description
A set of decision making tools to conduct missing person searches.
Particularly, it allows computing optimal LR threshold for declaring
potential matches in DNA-based database search. More recently 'mispitools'
incorporates preliminary investigation data based LRs. Statistical weight
of different traces of evidence such as biological sex, age and hair color
are presented. For citing mispitools please use the following references:
Marsico and Caridi, 2023 <doi:10.1016/j.fsigen.2023.102891> and Marsico,
Vigeland et al. 2021 <doi:10.1016/j.fsigen.2021.102519>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}