%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  LipidomicsR
%global packver   0.3.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.6
Release:          1%{?dist}%{?buildtag}
Summary:          Elegant Tools for Processing and Visualization of Lipidomics Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-tidyverse 
BuildRequires:    R-CRAN-broom 
BuildRequires:    R-CRAN-car 
BuildRequires:    R-CRAN-ggiraph 
BuildRequires:    R-CRAN-rcompanion 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-fmsb 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggplotify 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-pheatmap 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-CRAN-ggforce 
BuildRequires:    R-CRAN-ggsci 
Requires:         R-CRAN-tidyverse 
Requires:         R-CRAN-broom 
Requires:         R-CRAN-car 
Requires:         R-CRAN-ggiraph 
Requires:         R-CRAN-rcompanion 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-cowplot 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-fmsb 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggplotify 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-pheatmap 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyselect 
Requires:         R-CRAN-ggforce 
Requires:         R-CRAN-ggsci 

%description
An elegant tool for processing and visualizing lipidomics data generated
by mass spectrometry. 'LipidomicsR' simplifies channel and replicate
handling while providing thorough lipid species annotation. Its
visualization capabilities encompass principal components analysis plots,
heatmaps, volcano plots, and radar plots, enabling concise data
summarization and quality assessment. Additionally, it can generate bar
plots and line plots to visualize the abundance of each lipid species.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}