%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  HGNChelper
%global packver   0.8.14
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.8.14
Release:          1%{?dist}%{?buildtag}
Summary:          Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

License:          GPL (>= 2.0)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-methods 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-splitstackshape 
Requires:         R-methods 
Requires:         R-utils 
Requires:         R-CRAN-splitstackshape 

%description
Contains functions for identifying and correcting HGNC human gene symbols
and MGI mouse gene symbols which have been converted to date format by
Excel, withdrawn, or aliased. Also contains functions for reversibly
converting between HGNC symbols and valid R names.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}