%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  disbayes
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Bayesian Multi-State Modelling of Chronic Disease Burden Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-rstan >= 2.26.0
BuildRequires:    R-CRAN-StanHeaders >= 2.26.0
BuildRequires:    R-CRAN-BH >= 1.66.0
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.3.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.0
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-generics 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-SHELF 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-loo 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-CRAN-RcppParallel 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-rstan >= 2.26.0
Requires:         R-CRAN-Rcpp >= 0.12.0
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-generics 
Requires:         R-methods 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-SHELF 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-loo 
Requires:         R-CRAN-matrixStats 
Requires:         R-CRAN-rstantools

%description
Estimation of incidence and case fatality for a chronic disease, given
partial information, using a multi-state model. Given data on age-specific
mortality and either incidence or prevalence, Bayesian inference is used
to estimate the posterior distributions of incidence, case fatality, and
functions of these such as prevalence.  The methods are described in
Jackson et al. (2023) <doi:10.1093/jrsssa/qnac015>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}