get_mcmc_ensemble_model {EcoEnsemble}R Documentation

Return the compiled ensemble model Stan object.

Description

Gets the unfit, compiled stanmodel object encoding the ensemble model. This allows for manual fitting of the ensemble model directly using.

Usage

get_mcmc_ensemble_model()

Value

The stanmodel object encoding the ensemble model.

Examples

mod <- get_mcmc_ensemble_model()

priors <- EnsemblePrior(4)
ensemble_data <- EnsembleData(observations = list(SSB_obs, Sigma_obs),
                             simulators = list(list(SSB_ewe, Sigma_ewe, "EwE"),
                                           list(SSB_fs,  Sigma_fs, "FishSUMS"),
                                           list(SSB_lm,  Sigma_lm, "LeMans"),
                                           list(SSB_miz, Sigma_miz, "mizer")),
                              priors = priors)

out <- rstan::sampling(mod, ensemble_data@stan_input, chains = 1)


[Package EcoEnsemble version 1.0.5 Index]