%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  topr
%global packver   2.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Create Custom Plots for Viewing Genetic Association Results

License:          LGPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 >= 3.3.2
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-stringr >= 1.4.0
BuildRequires:    R-CRAN-scales >= 1.1.1
BuildRequires:    R-CRAN-dplyr >= 1.0.2
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-egg 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-enshuman 
Requires:         R-CRAN-ggplot2 >= 3.3.2
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-stringr >= 1.4.0
Requires:         R-CRAN-scales >= 1.1.1
Requires:         R-CRAN-dplyr >= 1.0.2
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-egg 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-utils 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-enshuman 

%description
A collection of functions for visualizing,exploring and annotating genetic
association results.Association results from multiple traits can be viewed
simultaneously along with gene annotation, over the entire genome
(Manhattan plot) or in the more detailed regional view.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}