%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  serocalculator
%global packver   1.0.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.3
Release:          1%{?dist}%{?buildtag}
Summary:          Estimating Infection Rates from Serological Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildRequires:    R-CRAN-dplyr >= 1.1.1
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-mixtools 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rngtools 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-cli 
Requires:         R-CRAN-dplyr >= 1.1.1
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-mixtools 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rngtools 
Requires:         R-CRAN-scales 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-utils 
Requires:         R-CRAN-cli 

%description
Translates antibody levels measured in cross-sectional population samples
into estimates of the frequency with which seroconversions (infections)
occur in the sampled populations. Replaces the previous 'seroincidence'
package. Methods originally published in Simonsen et al. (2009)
<doi:10.1002/sim.3592> and Teunis et al. (2012) <doi:10.1002/sim.5322>,
and further developed in subsequent publications by de Graaf et al. (2014)
<doi:10.1016/j.epidem.2014.08.002>, Teunis et al. (2016)
<doi:10.1016/j.epidem.2016.04.001>, and Teunis et al. (2020)
<doi:10.1002/sim.8578>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}