Clustering {GenoTriplo}R Documentation

Clustering function

Description

Clustering function to run clustering with no parallelization process nor auto save

Usage

Clustering(
  dataset,
  nb_clust_possible,
  n_iter = 5,
  Dmin = 0.28,
  SampleName = NULL
)

Arguments

dataset

dataset with Contrast and SigStren for each individuals (as SampleName) and each markers (as MarkerName)

nb_clust_possible

number of cluster possible (ploidy+1)

n_iter

number of iterations to perform for clustering

Dmin

minimal distance between two clusters

SampleName

vector with all SampleName (important when missing genotype)

Value

list of results of clustering

Examples

data(GenoTriplo_to_clust)
ploidy=3
res = Clustering(dataset=GenoTriplo_to_clust,
                 nb_clust_possible=ploidy+1,n_iter=5)


[Package GenoTriplo version 1.1.0 Index]