%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname tRigon %global packver 0.3.3 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.3.3 Release: 1%{?dist}%{?buildtag} Summary: Toolbox for Integrative Pathomics Analysis License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel Requires: R-core BuildArch: noarch BuildRequires: R-CRAN-caret >= 6.0.94 BuildRequires: R-CRAN-randomForest >= 4.7.1.1 BuildRequires: R-CRAN-ggplot2 >= 3.4.2 BuildRequires: R-CRAN-shinydashboardPlus >= 2.0.3 BuildRequires: R-CRAN-shiny >= 1.7.4.1 BuildRequires: R-CRAN-markdown >= 1.7 BuildRequires: R-CRAN-readxl >= 1.4.3 BuildRequires: R-CRAN-writexl >= 1.4.2 BuildRequires: R-CRAN-boot >= 1.3.28 BuildRequires: R-CRAN-sessioninfo >= 1.2.2 BuildRequires: R-CRAN-data.table >= 1.14.8 BuildRequires: R-CRAN-simpleboot >= 1.1.7 BuildRequires: R-CRAN-RColorBrewer >= 1.1.3 BuildRequires: R-CRAN-dplyr >= 1.1.2 BuildRequires: R-CRAN-patchwork >= 1.1.2 BuildRequires: R-CRAN-factoextra >= 1.0.7 BuildRequires: R-CRAN-shinyWidgets >= 0.7.6 BuildRequires: R-CRAN-shinydashboard >= 0.7.2 BuildRequires: R-CRAN-ggpubr >= 0.6.0 BuildRequires: R-CRAN-ggridges >= 0.5.4 BuildRequires: R-CRAN-DT >= 0.28 BuildRequires: R-CRAN-ggcorrplot >= 0.1.4 Requires: R-CRAN-caret >= 6.0.94 Requires: R-CRAN-randomForest >= 4.7.1.1 Requires: R-CRAN-ggplot2 >= 3.4.2 Requires: R-CRAN-shinydashboardPlus >= 2.0.3 Requires: R-CRAN-shiny >= 1.7.4.1 Requires: R-CRAN-markdown >= 1.7 Requires: R-CRAN-readxl >= 1.4.3 Requires: R-CRAN-writexl >= 1.4.2 Requires: R-CRAN-boot >= 1.3.28 Requires: R-CRAN-sessioninfo >= 1.2.2 Requires: R-CRAN-data.table >= 1.14.8 Requires: R-CRAN-simpleboot >= 1.1.7 Requires: R-CRAN-RColorBrewer >= 1.1.3 Requires: R-CRAN-dplyr >= 1.1.2 Requires: R-CRAN-patchwork >= 1.1.2 Requires: R-CRAN-factoextra >= 1.0.7 Requires: R-CRAN-shinyWidgets >= 0.7.6 Requires: R-CRAN-shinydashboard >= 0.7.2 Requires: R-CRAN-ggpubr >= 0.6.0 Requires: R-CRAN-ggridges >= 0.5.4 Requires: R-CRAN-DT >= 0.28 Requires: R-CRAN-ggcorrplot >= 0.1.4 %description Processing and analysis of pathomics, omics and other medical datasets. 'tRigon' serves as a toolbox for descriptive and statistical analysis, correlations, plotting and many other methods for exploratory analysis of high-dimensional datasets. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}