thinner {rbacon} | R Documentation |
Thin iterations.
Description
Randomly thin iterations by a given proportion, for example if autocorrelation is visible within the MCMC series.
Usage
thinner(proportion = 0.1, set = get("info"), write = TRUE, save.info = TRUE)
Arguments
proportion |
Proportion of iterations to remove. Should be between 0 and 1. Default |
set |
Detailed information of the current run, stored within this session's memory as variable |
write |
Whether or not to write the changes to the output file. Defaults to TRUE. |
save.info |
By default, a variable called ‘info’ with relevant information about the run (e.g., core name, priors, settings, ages, output) is saved into the working directory. Note that this will overwrite any existing variable with the same name - as an alternative, one could run, e.g., |
Details
From all iterations, a proportion is removed with to-be-removed iterations sampled randomly among all iterations.
Value
NA
Author(s)
Maarten Blaauw, J. Andres Christen
Examples
Bacon(ask=FALSE, coredir=tempfile())
nrow(info$output)
thinner(.2)
nrow(info$output)