%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  posologyr
%global packver   1.2.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.7
Release:          1%{?dist}%{?buildtag}
Summary:          Individual Dose Optimization using Population Pharmacokinetics

License:          AGPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-rxode2 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-data.table 
Requires:         R-CRAN-rxode2 
Requires:         R-stats 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-data.table 

%description
Optimize drug regimens through model-informed precision dosing, using
individual pharmacokinetic (PK) and pharmacokinetic-pharmacodynamic
(PK-PD) profiles. By integrating therapeutic drug monitoring (TDM) data
with population models, 'posologyr' provides accurate posterior estimates
and enables the calculation of personalized dosing regimens. The empirical
Bayes estimates are computed following the method described by Kang et al.
(2012) <doi:10.4196/kjpp.2012.16.2.97>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}