rbind.rxEt |
Combining event tables |
rename.function |
Rename items inside of a 'rxode2' ui model |
rename.rxUi |
Rename items inside of a 'rxode2' ui model |
rep.rxEt |
Repeat an rxode2 event table |
rinvchisq |
Scaled Inverse Chi Squared distribution |
rxAllowUnload |
Allow unloading of dlls |
rxAppendModel |
Append two rxui models together |
rxAssignControlValue |
Assign Control Variable |
rxAssignPtr |
Assign pointer based on model variables |
rxbeta |
Simulate beta variable from threefry generator |
rxbinom |
Simulate Binomial variable from threefry generator |
rxcauchy |
Simulate Cauchy variable from threefry generator |
rxCbindStudyIndividual |
Bind the study parameters and individual parameters |
rxchisq |
Simulate chi-squared variable from threefry generator |
rxClean |
Cleanup anonymous DLLs by unloading them |
rxCompile |
Compile a model if needed |
rxCompile.character |
Compile a model if needed |
rxCompile.rxDll |
Compile a model if needed |
rxCompile.rxModelVars |
Compile a model if needed |
rxCompile.rxode2 |
Compile a model if needed |
rxControl |
Options, Solving & Simulation of an ODE/solved system |
rxControlUpdateSens |
This updates the tolerances based on the sensitivity equations |
rxCores |
Get/Set the number of threads that rxode2 uses |
rxCreateCache |
This will create the cache directory for rxode2 to save between sessions |
rxD |
Add to rxode2's derivative tables |
rxDelete |
Delete the DLL for the model |
rxDerived |
Calculate derived parameters for the 1-, 2-, and 3- compartment linear models. |
rxDfdy |
Jacobian and parameter derivatives |
rxEtDispatchSolve |
Dispatch solve to 'rxode2' solve |
rxEtDispatchSolve.default |
Dispatch solve to 'rxode2' solve |
rxEvid |
EVID formatting for tibble and other places. |
rxexp |
Simulate exponential variable from threefry generator |
rxf |
Simulate F variable from threefry generator |
rxFixPop |
Apply the fixed population estimated parameters |
rxFromSE |
rxode2 to symengine environment |
rxFun |
Add/Create C functions for use in rxode2 |
rxgamma |
Simulate gamma variable from threefry generator |
rxgeom |
Simulate geometric variable from threefry generator |
rxGetControl |
rxGetControl option from ui |
rxGetLin |
Get the linear compartment model true function |
rxGetrxode2 |
Get rxode2 model from object |
rxGetSeed |
Get the rxode2 seed |
rxHtml |
Format rxSolve and related objects as html. |
rxHtml.rxSolve |
Format rxSolve and related objects as html. |
rxIndLinState |
Set the preferred factoring by state |
rxIndLinStrategy |
This sets the inductive linearization strategy for matrix building |
rxInv |
Invert matrix using RcppArmadillo. |
rxIsCurrent |
Checks if the rxode2 object was built with the current build |
rxLhs |
Left handed Variables |
rxLock |
Lock/unlocking of rxode2 dll file |
rxnbinom |
Simulate Binomial variable from threefry generator |
rxnbinomMu |
Simulate Binomial variable from threefry generator |
rxNorm |
Get the normalized model |
rxnorm |
Simulate random normal variable from threefry generator |
rxnormV |
Simulate random normal variable from threefry generator |
RxODE |
Create an ODE-based model specification |
rxode |
Create an ODE-based model specification |
rxode2 |
Create an ODE-based model specification |
rxode2<- |
Set the function body of an rxUi object while retaining other object information (like data) |
rxode2<-.default |
Set the function body of an rxUi object while retaining other object information (like data) |
rxode2<-.function |
Set the function body of an rxUi object while retaining other object information (like data) |
rxode2parse |
Internal translation to get model variables list |
rxode2parseAssignPackagesToLoad |
Control the packages that are loaded when a 'rxode2' model dll is loaded |
rxode2parseAssignTranslation |
This assigns the c level linkages for a roxde2 model |
rxode2parseD |
This gives the derivative table for rxode2 |
rxode2parseGetPackagesToLoad |
Control the packages that are loaded when a 'rxode2' model dll is loaded |
rxode2parseGetPointerAssignment |
This function gets the currently assigned function pointer assignments |
rxode2parseGetTranslation |
This function gets the currently assigned translations |
RxODE<- |
Set the function body of an rxUi object while retaining other object information (like data) |
rxode<- |
Set the function body of an rxUi object while retaining other object information (like data) |
rxOptExpr |
Optimize rxode2 for computer evaluation |
rxord |
Simulate ordinal value |
rxParam |
Parameters specified by the model |
rxParams |
Parameters specified by the model |
rxParams.rxEt |
Parameters specified by the model |
rxParams.rxode2 |
Parameters specified by the model |
rxParams.rxSolve |
Parameters specified by the model |
rxParseSuppressMsg |
Respect suppress messages |
rxPkg |
Creates a package from compiled rxode2 models |
rxpois |
Simulate random Poisson variable from threefry generator |
rxPp |
Simulate a from a Poisson process |
rxPreferredDistributionName |
Change distribution name to the preferred distribution name term |
rxProgress |
rxode2 progress bar functions |
rxProgressAbort |
rxode2 progress bar functions |
rxProgressStop |
rxode2 progress bar functions |
rxRateDur |
Creates a rxRateDur object |
rxRemoveControl |
rxRemoveControl options for UI object |
rxRename |
Rename items inside of a 'rxode2' ui model |
rxRename.default |
Rename items inside of a 'rxode2' ui model |
rxRename.function |
Rename items inside of a 'rxode2' ui model |
rxRename.rxUi |
Rename items inside of a 'rxode2' ui model |
rxReservedKeywords |
A list and description of rxode2 supported reserved keywords |
rxResidualError |
A description of Rode2 supported residual errors |
rxRmFun |
Add/Create C functions for use in rxode2 |
rxRmvn |
Simulate from a (truncated) multivariate normal |
rxS |
Load a model into a symengine environment |
rxSetControl |
rxSetControl options for UI object |
rxSetCovariateNamesForPiping |
Assign covariates for piping |
rxSetIni0 |
Set Initial conditions to time zero instead of the first observed/dosed time |
rxSetPipingAuto |
Set the variables for the model piping automatic covarite selection |
rxSetProd |
Defunct setting of product |
rxSetProgressBar |
Set timing for progress bar |
rxSetSeed |
Set the parallel seed for rxode2 random number generation |
rxSetSum |
Defunct setting of sum |
rxShiny |
Use Shiny to help develop an rxode2 model |
rxShiny.default |
Use Shiny to help develop an rxode2 model |
rxShiny.rxSolve |
Use Shiny to help develop an rxode2 model |
rxSimThetaOmega |
Simulate Parameters from a Theta/Omega specification |
rxSolve |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.default |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.function |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.nlmixr2FitCore |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.nlmixr2FitData |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.rxode2tos |
Options, Solving & Simulation of an ODE/solved system |
rxSolve.rxUi |
Options, Solving & Simulation of an ODE/solved system |
rxStack |
Stack a solved object for things like default ggplot2 plot |
rxState |
State variables |
rxSumProdModel |
Recast model in terms of sum/prod |
rxSupportedFuns |
Get list of supported functions |
rxSuppressMsg |
Respect suppress messages |
rxSymInvChol |
Get Omega^-1 and derivatives |
rxSyncOptions |
Sync options with rxode2 variables |
rxSyntaxFunctions |
A list and description of Rode supported syntax functions |
rxt |
Simulate student t variable from threefry generator |
rxTempDir |
Get the rxode2 temporary directory |
rxTest |
Validate rxode2 This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
rxTheme |
rxTheme is the ggplot2 theme for rxode2 plots |
rxTick |
rxode2 progress bar functions |
rxToSE |
rxode2 to symengine environment |
rxTrans |
Translate the model to C code if needed |
rxTrans.character |
Translate the model to C code if needed |
rxTrans.default |
Translate the model to C code if needed |
rxUiCompress |
Compress/Decompress 'rxode2' ui |
rxUiDecompress |
Compress/Decompress 'rxode2' ui |
rxUiDeparse |
This is a generic function for deparsing certain objects when printing out a rxode2 object. Currently it is used for any meta-information |
rxUiDeparse.default |
This is a generic function for deparsing certain objects when printing out a rxode2 object. Currently it is used for any meta-information |
rxUiDeparse.lotriFix |
This is a generic function for deparsing certain objects when printing out a rxode2 object. Currently it is used for any meta-information |
rxUiDeparse.rxControl |
This is a generic function for deparsing certain objects when printing out a rxode2 object. Currently it is used for any meta-information |
rxUiGet |
S3 for getting information from UI model |
rxUiGet.allCovs |
S3 for getting information from UI model |
rxUiGet.cmtLines |
S3 for getting information from UI model |
rxUiGet.covLhs |
S3 for getting information from UI model |
rxUiGet.default |
S3 for getting information from UI model |
rxUiGet.dvidLine |
S3 for getting information from UI model |
rxUiGet.etaLhs |
S3 for getting information from UI model |
rxUiGet.fun |
S3 for getting information from UI model |
rxUiGet.funPrint |
S3 for getting information from UI model |
rxUiGet.funTxt |
S3 for getting information from UI model |
rxUiGet.ini |
S3 for getting information from UI model |
rxUiGet.iniFun |
S3 for getting information from UI model |
rxUiGet.interpLines |
S3 for getting information from UI model |
rxUiGet.levels |
S3 for getting information from UI model |
rxUiGet.lhsCov |
S3 for getting information from UI model |
rxUiGet.lhsEta |
S3 for getting information from UI model |
rxUiGet.lhsTheta |
S3 for getting information from UI model |
rxUiGet.lhsVar |
S3 for getting information from UI model |
rxUiGet.lstChr |
S3 for getting information from UI model |
rxUiGet.md5 |
S3 for getting information from UI model |
rxUiGet.model |
S3 for getting information from UI model |
rxUiGet.modelDesc |
S3 for getting information from UI model |
rxUiGet.modelFun |
S3 for getting information from UI model |
rxUiGet.multipleEndpoint |
S3 for getting information from UI model |
rxUiGet.muRefTable |
S3 for getting information from UI model |
rxUiGet.omega |
S3 for getting information from UI model |
rxUiGet.paramsLine |
S3 for getting information from UI model |
rxUiGet.props |
S3 for getting information from UI model |
rxUiGet.simulationIniModel |
S3 for getting information from UI model |
rxUiGet.simulationModel |
S3 for getting information from UI model |
rxUiGet.simulationSigma |
S3 for getting information from UI model |
rxUiGet.state |
S3 for getting information from UI model |
rxUiGet.stateDf |
S3 for getting information from UI model |
rxUiGet.statePropDf |
S3 for getting information from UI model |
rxUiGet.symengineModelNoPrune |
S3 for getting information from UI model |
rxUiGet.symengineModelPrune |
S3 for getting information from UI model |
rxUiGet.theta |
S3 for getting information from UI model |
rxUiGet.thetaLhs |
S3 for getting information from UI model |
rxUiGet.thetaLower |
S3 for getting information from UI model |
rxUiGet.thetaUpper |
S3 for getting information from UI model |
rxUiGet.varLhs |
S3 for getting information from UI model |
rxunif |
Simulate uniform variable from threefry generator |
rxUnloadAll |
Unloads all rxode2 compiled DLLs |
rxUnlock |
Lock/unlocking of rxode2 dll file |
rxUse |
Use model object in your package |
rxValidate |
Validate rxode2 This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
rxweibull |
Simulate Weibull variable from threefry generator |
rxWithPreserveSeed |
Preserved seed and possibly set the seed |
rxWithSeed |
Preserved seed and possibly set the seed |