Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c113' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8032967-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.73
PID: 6760
Logging PID: 6761
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'bootstrap': 'off',
 'build_id': 8032967,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'c2bc9c8193fc0fd3ffd9b682cb285573304ddf7e',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-rxode2',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'R-CRAN-rxode2',
 'package_version': '3.0.0-1.copr8032967',
 'project_dirname': 'cran',
 'project_name': 'cran',
 'project_owner': 'iucar',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'iucar/cran--iucar',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'iucar',
 'tags': [],
 'task_id': '8032967-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-rxode2 /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2 --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-rxode2', '/var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2'...

Running: git checkout c2bc9c8193fc0fd3ffd9b682cb285573304ddf7e --

cmd: ['git', 'checkout', 'c2bc9c8193fc0fd3ffd9b682cb285573304ddf7e', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2
rc: 0
stdout: 
stderr: Note: switching to 'c2bc9c8193fc0fd3ffd9b682cb285573304ddf7e'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at c2bc9c8 automatic import of R-CRAN-rxode2

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading rxode2_3.0.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o rxode2_3.0.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-rxode2/rxode2_3.0.0.tar.gz/md5/73e1a5b8dfe3a203607982c664590151/rxode2_3.0.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 3943k  100 3943k    0     0  8100k      0 --:--:-- --:--:-- --:--:-- 8098k
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Reading stdout from command: md5sum rxode2_3.0.0.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2/R-CRAN-rxode2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726710516.152598 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2/R-CRAN-rxode2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726710516.152598 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2/R-CRAN-rxode2.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1726710516.152598/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (fallback)
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.19.1.1-1.fc39.x86_64
  rpm-sequoia-1.6.0-1.fc39.x86_64
  python3-dnf-4.21.1-1.fc39.noarch
  python3-dnf-plugins-core-4.9.0-1.fc39.noarch
  yum-4.21.1-1.fc39.noarch
  dnf5-5.1.17-2.fc39.x86_64
  dnf5-plugins-5.1.17-2.fc39.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  10.9 MiB/s |  21.8 MiB |  00m02s
 Copr repository                        100% |  26.2 MiB/s |  12.2 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:                                                        
 bash                              x86_64 5.2.32-2.fc42              fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              fedora      95.7 KiB
 coreutils                         x86_64 9.5-9.fc42                 fedora       5.7 MiB
 cpio                              x86_64 2.15-2.fc41                fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 42-0.3                     fedora      19.4 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40.9000-1.fc42           fedora       0.0   B
 grep                              x86_64 3.11-9.fc41                fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                fedora     389.0 KiB
 info                              x86_64 7.1.1-1.fc42               fedora     361.9 KiB
 patch                             x86_64 2.7.6-25.fc41              fedora     266.7 KiB
 redhat-rpm-config                 noarch 295-1.fc42                 fedora     186.6 KiB
 rpm-build                         x86_64 4.19.94-1.fc42             fedora     194.3 KiB
 sed                               x86_64 4.9-3.fc41                 fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.16.0-3.fc42            fedora       4.1 MiB
 tar                               x86_64 2:1.35-4.fc41              fedora       2.9 MiB
 unzip                             x86_64 6.0-64.fc41                fedora     386.8 KiB
 util-linux                        x86_64 2.40.2-8.fc42              fedora       3.7 MiB
 which                             x86_64 2.21-42.fc41               fedora      80.2 KiB
 xz                                x86_64 1:5.6.2-2.fc41             fedora       1.2 MiB
Installing dependencies:                                                                 
 add-determinism                   x86_64 0.3.6-1.fc41               fedora       2.2 MiB
 alternatives                      x86_64 1.30-1.fc41                fedora      66.3 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        x86_64 4.0.2-1.fc41               fedora     331.3 KiB
 authselect                        x86_64 1.5.0-7.fc41               fedora     153.5 KiB
 authselect-libs                   x86_64 1.5.0-7.fc41               fedora     818.3 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          x86_64 2.43.1-1.fc42              fedora      27.5 MiB
 build-reproducibility-srpm-macros noarch 0.3.6-1.fc41               fedora     735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.68_v8.0.302-3.fc41  fedora       2.3 MiB
 coreutils-common                  x86_64 9.5-9.fc42                 fedora      11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              fedora     238.9 KiB
 crypto-policies                   noarch 20240828-1.git5f66e81.fc42 fedora     136.9 KiB
 curl                              x86_64 8.10.0-1.fc42              fedora     453.3 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             fedora       2.3 MiB
 debugedit                         x86_64 5.0-17.fc41                fedora     199.3 KiB
 dwz                               x86_64 0.15-7.fc41                fedora     290.9 KiB
 ed                                x86_64 1.20.2-2.fc41              fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  fedora      40.1 KiB
 elfutils                          x86_64 0.191-8.fc41               fedora       2.6 MiB
 elfutils-debuginfod-client        x86_64 0.191-8.fc41               fedora      64.9 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0.191-8.fc41               fedora       1.2 MiB
 elfutils-libs                     x86_64 0.191-8.fc41               fedora     646.2 KiB
 fedora-gpg-keys                   noarch 42-0.1                     fedora     126.4 KiB
 fedora-release                    noarch 42-0.3                     fedora       0.0   B
 fedora-release-identity-basic     noarch 42-0.3                     fedora     694.0   B
 fedora-repos                      noarch 42-0.1                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 42-0.1                     fedora       2.2 KiB
 file                              x86_64 5.45-7.fc41                fedora     103.5 KiB
 file-libs                         x86_64 5.45-7.fc41                fedora       9.9 MiB
 filesystem                        x86_64 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.3.2-1.fc41               fedora      39.0 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       x86_64 15.1-2.fc42                fedora      13.0 MiB
 gdbm                              x86_64 1:1.23-7.fc41              fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41               fedora     747.0   B
 glibc                             x86_64 2.40.9000-1.fc42           fedora       6.7 MiB
 glibc-common                      x86_64 2.40.9000-1.fc42           fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 2.40.9000-1.fc42           fedora       8.1 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               fedora      60.8 KiB
 jansson                           x86_64 2.13.1-10.fc41             fedora      88.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-2.fc41              fedora       2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               fedora      40.0 KiB
 libarchive                        x86_64 3.7.4-3.fc41               fedora     922.6 KiB
 libattr                           x86_64 2.5.2-4.fc41               fedora      28.5 KiB
 libblkid                          x86_64 2.40.2-8.fc42              fedora     262.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               fedora     837.6 KiB
 libcap                            x86_64 2.70-4.fc41                fedora     220.2 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-3.fc41              fedora      67.2 KiB
 libcurl                           x86_64 8.10.0-1.fc42              fedora     834.3 KiB
 libeconf                          x86_64 0.6.2-3.fc41               fedora      58.0 KiB
 libevent                          x86_64 2.1.12-14.fc41             fedora     895.7 KiB
 libfdisk                          x86_64 2.40.2-8.fc42              fedora     362.9 KiB
 libffi                            x86_64 3.4.6-3.fc42               fedora      86.4 KiB
 libgcc                            x86_64 14.2.1-3.fc42              fedora     274.6 KiB
 libgomp                           x86_64 14.2.1-3.fc42              fedora     523.8 KiB
 libidn2                           x86_64 2.3.7-2.fc41               fedora     329.1 KiB
 libmount                          x86_64 2.40.2-8.fc42              fedora     355.8 KiB
 libnghttp2                        x86_64 1.63.0-1.fc42              fedora     170.1 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc42               fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              fedora     417.8 KiB
 libselinux                        x86_64 3.7-6.fc42                 fedora     181.1 KiB
 libsemanage                       x86_64 3.7-3.fc42                 fedora     298.0 KiB
 libsepol                          x86_64 3.7-3.fc42                 fedora     818.0 KiB
 libsmartcols                      x86_64 2.40.2-8.fc42              fedora     180.4 KiB
 libssh                            x86_64 0.11.1-1.fc42              fedora     569.6 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         x86_64 14.2.1-3.fc42              fedora       2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              fedora     175.7 KiB
 libtirpc                          x86_64 1.3.5-0.fc41               fedora     202.7 KiB
 libtool-ltdl                      x86_64 2.4.7-12.fc41              fedora      66.2 KiB
 libunistring                      x86_64 1.1-8.fc41                 fedora       1.7 MiB
 libuuid                           x86_64 2.40.2-8.fc42              fedora      41.4 KiB
 libverto                          x86_64 0.3.2-9.fc41               fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.36-7.fc41              fedora     266.8 KiB
 libxml2                           x86_64 2.12.8-2.fc41              fedora       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               fedora     795.9 KiB
 lua-libs                          x86_64 5.4.6-6.fc41               fedora     285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          x86_64 2.6.8-5.fc41               fedora     644.2 KiB
 openssl-libs                      x86_64 1:3.2.2-8.fc42             fedora       7.8 MiB
 p11-kit                           x86_64 0.25.5-3.fc41              fedora       2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-3.fc41              fedora     391.4 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               x86_64 1.6.1-6.fc42               fedora       1.8 MiB
 pam-libs                          x86_64 1.6.1-6.fc42               fedora     139.0 KiB
 pcre2                             x86_64 10.44-1.fc41.1             fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc42               fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc42               fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.14.0-1.fc41              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               fedora     456.0   B
 readline                          x86_64 8.2-11.fc42                fedora     493.1 KiB
 rpm                               x86_64 4.19.94-1.fc42             fedora       3.1 MiB
 rpm-build-libs                    x86_64 4.19.94-1.fc42             fedora     206.7 KiB
 rpm-libs                          x86_64 4.19.94-1.fc42             fedora     722.1 KiB
 rpm-sequoia                       x86_64 1.7.0-2.fc41               fedora       2.4 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       x86_64 3.46.0-4.fc41              fedora       1.4 MiB
 systemd-libs                      x86_64 256.5-1.fc42               fedora       2.0 MiB
 util-linux-core                   x86_64 2.40.2-8.fc42              fedora       1.5 MiB
 xxhash-libs                       x86_64 0.8.2-3.fc41               fedora      88.5 KiB
 xz-libs                           x86_64 1:5.6.2-2.fc41             fedora     214.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               x86_64 3.0-41.fc41                fedora     703.2 KiB
 zlib-ng-compat                    x86_64 2.1.7-3.fc42               fedora     138.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:                                                                       
 Buildsystem building group                                                              

Transaction Summary:
 Installing:      153 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 180 MiB will be used (install 180 MiB, remove 0 B).
[  1/153] bzip2-0:1.0.8-19.fc41.x86_64  100% | 276.4 KiB/s |  52.5 KiB |  00m00s
[  2/153] cpio-0:2.15-2.fc41.x86_64     100% |   2.6 MiB/s | 291.8 KiB |  00m00s
[  3/153] coreutils-0:9.5-9.fc42.x86_64 100% |   3.5 MiB/s |   1.1 MiB |  00m00s
[  4/153] bash-0:5.2.32-2.fc42.x86_64   100% |   5.2 MiB/s |   1.8 MiB |  00m00s
[  5/153] fedora-release-common-0:42-0. 100% | 719.0 KiB/s |  23.0 KiB |  00m00s
[  6/153] diffutils-0:3.10-8.fc41.x86_6 100% |   6.1 MiB/s | 405.4 KiB |  00m00s
[  7/153] glibc-minimal-langpack-0:2.40 100% |   3.6 MiB/s | 120.9 KiB |  00m00s
[  8/153] findutils-1:4.10.0-4.fc41.x86 100% |  13.4 MiB/s | 548.6 KiB |  00m00s
[  9/153] grep-0:3.11-9.fc41.x86_64     100% |   7.3 MiB/s | 299.8 KiB |  00m00s
[ 10/153] gzip-0:1.13-2.fc41.x86_64     100% |   5.0 MiB/s | 170.2 KiB |  00m00s
[ 11/153] info-0:7.1.1-1.fc42.x86_64    100% |   5.4 MiB/s | 182.8 KiB |  00m00s
[ 12/153] patch-0:2.7.6-25.fc41.x86_64  100% |   3.8 MiB/s | 131.0 KiB |  00m00s
[ 13/153] redhat-rpm-config-0:295-1.fc4 100% |   2.5 MiB/s |  82.4 KiB |  00m00s
[ 14/153] rpm-build-0:4.19.94-1.fc42.x8 100% |   2.5 MiB/s |  83.1 KiB |  00m00s
[ 15/153] sed-0:4.9-3.fc41.x86_64       100% |   7.8 MiB/s | 317.7 KiB |  00m00s
[ 16/153] tar-2:1.35-4.fc41.x86_64      100% |  17.9 MiB/s | 860.7 KiB |  00m00s
[ 17/153] shadow-utils-2:4.16.0-3.fc42. 100% |  22.7 MiB/s |   1.3 MiB |  00m00s
[ 18/153] unzip-0:6.0-64.fc41.x86_64    100% |   5.0 MiB/s | 184.9 KiB |  00m00s
[ 19/153] which-0:2.21-42.fc41.x86_64   100% |   1.3 MiB/s |  41.6 KiB |  00m00s
[ 20/153] xz-1:5.6.2-2.fc41.x86_64      100% |  11.8 MiB/s | 471.5 KiB |  00m00s
[ 21/153] util-linux-0:2.40.2-8.fc42.x8 100% |  20.8 MiB/s |   1.2 MiB |  00m00s
[ 22/153] gawk-0:5.3.0-4.fc41.x86_64    100% |  13.9 MiB/s |   1.1 MiB |  00m00s
[ 23/153] filesystem-0:3.18-29.fc42.x86 100% |  17.5 MiB/s |   1.1 MiB |  00m00s
[ 24/153] ncurses-libs-0:6.5-2.20240629 100% |   8.4 MiB/s | 334.0 KiB |  00m00s
[ 25/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% |   1.1 MiB/s |  41.1 KiB |  00m00s
[ 26/153] glibc-0:2.40.9000-1.fc42.x86_ 100% |  33.0 MiB/s |   2.2 MiB |  00m00s
[ 27/153] gmp-1:6.3.0-2.fc41.x86_64     100% |   8.0 MiB/s | 318.0 KiB |  00m00s
[ 28/153] libacl-0:2.3.2-2.fc41.x86_64  100% | 597.6 KiB/s |  24.5 KiB |  00m00s
[ 29/153] coreutils-common-0:9.5-9.fc42 100% |  27.6 MiB/s |   2.1 MiB |  00m00s
[ 30/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 567.9 KiB/s |  18.2 KiB |  00m00s
[ 31/153] libcap-0:2.70-4.fc41.x86_64   100% |   2.6 MiB/s |  86.7 KiB |  00m00s
[ 32/153] libselinux-0:3.7-6.fc42.x86_6 100% |   2.7 MiB/s |  88.6 KiB |  00m00s
[ 33/153] systemd-libs-0:256.5-1.fc42.x 100% |  13.5 MiB/s | 730.4 KiB |  00m00s
[ 34/153] fedora-repos-0:42-0.1.noarch  100% | 203.8 KiB/s |   9.2 KiB |  00m00s
[ 35/153] openssl-libs-1:3.2.2-8.fc42.x 100% |  29.6 MiB/s |   2.3 MiB |  00m00s
[ 36/153] glibc-common-0:2.40.9000-1.fc 100% |  11.4 MiB/s | 409.4 KiB |  00m00s
[ 37/153] pcre2-0:10.44-1.fc41.1.x86_64 100% |   7.0 MiB/s | 243.1 KiB |  00m00s
[ 38/153] ed-0:1.20.2-2.fc41.x86_64     100% |   2.5 MiB/s |  81.8 KiB |  00m00s
[ 39/153] ansible-srpm-macros-0:1-16.fc 100% | 670.1 KiB/s |  20.8 KiB |  00m00s
[ 40/153] build-reproducibility-srpm-ma 100% | 342.0 KiB/s |  10.6 KiB |  00m00s
[ 41/153] dwz-0:0.15-7.fc41.x86_64      100% |   4.2 MiB/s | 138.0 KiB |  00m00s
[ 42/153] efi-srpm-macros-0:5-12.fc41.n 100% | 721.8 KiB/s |  22.4 KiB |  00m00s
[ 43/153] file-0:5.45-7.fc41.x86_64     100% |   1.5 MiB/s |  49.1 KiB |  00m00s
[ 44/153] fonts-srpm-macros-1:2.0.5-17. 100% | 898.9 KiB/s |  27.0 KiB |  00m00s
[ 45/153] forge-srpm-macros-0:0.3.2-1.f 100% | 635.6 KiB/s |  19.7 KiB |  00m00s
[ 46/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 256.8 KiB/s |   8.0 KiB |  00m00s
[ 47/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 301.9 KiB/s |   9.1 KiB |  00m00s
[ 48/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 288.8 KiB/s |   9.0 KiB |  00m00s
[ 49/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 901.7 KiB/s |  28.0 KiB |  00m00s
[ 50/153] kernel-srpm-macros-0:1.0-24.f 100% | 328.9 KiB/s |   9.9 KiB |  00m00s
[ 51/153] lua-srpm-macros-0:1-14.fc41.n 100% | 261.1 KiB/s |   8.9 KiB |  00m00s
[ 52/153] ocaml-srpm-macros-0:10-3.fc41 100% | 287.5 KiB/s |   9.2 KiB |  00m00s
[ 53/153] openblas-srpm-macros-0:2-18.f 100% | 248.9 KiB/s |   7.7 KiB |  00m00s
[ 54/153] package-notes-srpm-macros-0:0 100% | 317.1 KiB/s |   9.8 KiB |  00m00s
[ 55/153] perl-srpm-macros-0:1-56.fc41. 100% | 266.0 KiB/s |   8.5 KiB |  00m00s
[ 56/153] pyproject-srpm-macros-0:1.14. 100% | 419.6 KiB/s |  13.4 KiB |  00m00s
[ 57/153] python-srpm-macros-0:3.13-3.f 100% | 765.2 KiB/s |  23.7 KiB |  00m00s
[ 58/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 287.0 KiB/s |   8.9 KiB |  00m00s
[ 59/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 304.2 KiB/s |   9.1 KiB |  00m00s
[ 60/153] rust-srpm-macros-0:26.3-3.fc4 100% | 302.5 KiB/s |  12.1 KiB |  00m00s
[ 61/153] zig-srpm-macros-0:1-3.fc41.no 100% | 198.1 KiB/s |   8.1 KiB |  00m00s
[ 62/153] rpm-0:4.19.94-1.fc42.x86_64   100% |  11.1 MiB/s | 547.8 KiB |  00m00s
[ 63/153] zip-0:3.0-41.fc41.x86_64      100% |   5.7 MiB/s | 264.8 KiB |  00m00s
[ 64/153] debugedit-0:5.0-17.fc41.x86_6 100% | 964.8 KiB/s |  80.1 KiB |  00m00s
[ 65/153] elfutils-libelf-0:0.191-8.fc4 100% |   4.7 MiB/s | 207.6 KiB |  00m00s
[ 66/153] libarchive-0:3.7.4-3.fc41.x86 100% |   3.7 MiB/s | 409.2 KiB |  00m00s
[ 67/153] popt-0:1.19-7.fc41.x86_64     100% | 540.5 KiB/s |  65.9 KiB |  00m00s
[ 68/153] elfutils-0:0.191-8.fc41.x86_6 100% |   2.5 MiB/s | 529.4 KiB |  00m00s
[ 69/153] readline-0:8.2-11.fc42.x86_64 100% |   1.6 MiB/s | 213.4 KiB |  00m00s
[ 70/153] rpm-libs-0:4.19.94-1.fc42.x86 100% |   2.4 MiB/s | 309.6 KiB |  00m00s
[ 71/153] rpm-build-libs-0:4.19.94-1.fc 100% | 780.6 KiB/s |  99.1 KiB |  00m00s
[ 72/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 804.4 KiB/s |  32.2 KiB |  00m00s
[ 73/153] audit-libs-0:4.0.2-1.fc41.x86 100% |   1.9 MiB/s | 126.2 KiB |  00m00s
[ 74/153] libxcrypt-0:4.4.36-7.fc41.x86 100% |   2.0 MiB/s | 118.5 KiB |  00m00s
[ 75/153] zstd-0:1.5.6-2.fc41.x86_64    100% |   3.0 MiB/s | 481.5 KiB |  00m00s
[ 76/153] libsemanage-0:3.7-3.fc42.x86_ 100% |   1.0 MiB/s | 117.2 KiB |  00m00s
[ 77/153] pam-libs-0:1.6.1-6.fc42.x86_6 100% |   1.3 MiB/s |  57.2 KiB |  00m00s
[ 78/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% |   2.0 MiB/s | 111.8 KiB |  00m00s
[ 79/153] setup-0:2.15.0-5.fc41.noarch  100% |   2.2 MiB/s | 154.4 KiB |  00m00s
[ 80/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 707.9 KiB/s |  32.6 KiB |  00m00s
[ 81/153] libblkid-0:2.40.2-8.fc42.x86_ 100% |   1.4 MiB/s | 125.0 KiB |  00m00s
[ 82/153] mpfr-0:4.2.1-5.fc41.x86_64    100% |   2.5 MiB/s | 346.3 KiB |  00m00s
[ 83/153] libfdisk-0:2.40.2-8.fc42.x86_ 100% |   2.6 MiB/s | 159.6 KiB |  00m00s
[ 84/153] libsmartcols-0:2.40.2-8.fc42. 100% |   1.6 MiB/s |  83.9 KiB |  00m00s
[ 85/153] libuuid-0:2.40.2-8.fc42.x86_6 100% | 318.4 KiB/s |  29.0 KiB |  00m00s
[ 86/153] libmount-0:2.40.2-8.fc42.x86_ 100% |   1.3 MiB/s | 156.1 KiB |  00m00s
[ 87/153] zlib-ng-compat-0:2.1.7-3.fc42 100% | 748.9 KiB/s |  77.9 KiB |  00m00s
[ 88/153] util-linux-core-0:2.40.2-8.fc 100% |   3.0 MiB/s | 537.3 KiB |  00m00s
[ 89/153] basesystem-0:11-21.fc41.noarc 100% | 237.8 KiB/s |   7.4 KiB |  00m00s
[ 90/153] libgcc-0:14.2.1-3.fc42.x86_64 100% |   2.2 MiB/s | 133.3 KiB |  00m00s
[ 91/153] ncurses-base-0:6.5-2.20240629 100% |   1.6 MiB/s |  88.4 KiB |  00m00s
[ 92/153] libsepol-0:3.7-3.fc42.x86_64  100% |   3.7 MiB/s | 342.2 KiB |  00m00s
[ 93/153] crypto-policies-0:20240828-1. 100% |   2.1 MiB/s |  94.6 KiB |  00m00s
[ 94/153] ca-certificates-0:2024.2.68_v 100% |   5.3 MiB/s | 868.2 KiB |  00m00s
[ 95/153] fedora-gpg-keys-0:42-0.1.noar 100% |   2.6 MiB/s | 133.6 KiB |  00m00s
[ 96/153] fedora-repos-rawhide-0:42-0.1 100% | 291.4 KiB/s |   8.7 KiB |  00m00s
[ 97/153] pcre2-syntax-0:10.44-1.fc41.1 100% |   2.4 MiB/s | 149.9 KiB |  00m00s
[ 98/153] glibc-gconv-extra-0:2.40.9000 100% |   3.6 MiB/s |   1.7 MiB |  00m00s
[ 99/153] add-determinism-0:0.3.6-1.fc4 100% |   6.9 MiB/s | 851.8 KiB |  00m00s
[100/153] curl-0:8.10.0-1.fc42.x86_64   100% |   3.5 MiB/s | 221.1 KiB |  00m00s
[101/153] file-libs-0:5.45-7.fc41.x86_6 100% |   5.7 MiB/s | 762.0 KiB |  00m00s
[102/153] elfutils-libs-0:0.191-8.fc41. 100% |   4.7 MiB/s | 257.5 KiB |  00m00s
[103/153] elfutils-debuginfod-client-0: 100% |   1.0 MiB/s |  37.2 KiB |  00m00s
[104/153] libzstd-0:1.5.6-2.fc41.x86_64 100% |   5.1 MiB/s | 310.3 KiB |  00m00s
[105/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |   1.9 MiB/s |  70.7 KiB |  00m00s
[106/153] libstdc++-0:14.2.1-3.fc42.x86 100% |   7.4 MiB/s | 888.0 KiB |  00m00s
[107/153] libxml2-0:2.12.8-2.fc41.x86_6 100% |   5.7 MiB/s | 687.3 KiB |  00m00s
[108/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% |   3.1 MiB/s | 132.0 KiB |  00m00s
[109/153] libgomp-0:14.2.1-3.fc42.x86_6 100% |   5.5 MiB/s | 355.2 KiB |  00m00s
[110/153] elfutils-default-yama-scope-0 100% | 396.9 KiB/s |  12.3 KiB |  00m00s
[111/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% |   7.4 MiB/s | 892.5 KiB |  00m00s
[112/153] sqlite-libs-0:3.46.0-4.fc41.x 100% |   8.0 MiB/s | 712.4 KiB |  00m00s
[113/153] authselect-libs-0:1.5.0-7.fc4 100% |   4.2 MiB/s | 218.1 KiB |  00m00s
[114/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% |   1.6 MiB/s |  56.3 KiB |  00m00s
[115/153] authselect-0:1.5.0-7.fc41.x86 100% |   3.5 MiB/s | 145.7 KiB |  00m00s
[116/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 925.3 KiB/s |  29.6 KiB |  00m00s
[117/153] pam-0:1.6.1-6.fc42.x86_64     100% |   7.1 MiB/s | 554.2 KiB |  00m00s
[118/153] libpwquality-0:1.4.5-11.fc41. 100% |   3.0 MiB/s | 119.1 KiB |  00m00s
[119/153] libtirpc-0:1.3.5-0.fc41.x86_6 100% |   2.4 MiB/s |  94.2 KiB |  00m00s
[120/153] cracklib-0:2.9.11-6.fc41.x86_ 100% |   2.4 MiB/s |  92.0 KiB |  00m00s
[121/153] libcom_err-0:1.47.1-3.fc41.x8 100% | 825.3 KiB/s |  26.4 KiB |  00m00s
[122/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 959.1 KiB/s |  31.6 KiB |  00m00s
[123/153] krb5-libs-0:1.21.3-2.fc41.x86 100% |   9.0 MiB/s | 757.4 KiB |  00m00s
[124/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 667.5 KiB/s |  20.7 KiB |  00m00s
[125/153] alternatives-0:1.30-1.fc41.x8 100% |   1.1 MiB/s |  42.5 KiB |  00m00s
[126/153] jansson-0:2.13.1-10.fc41.x86_ 100% |   1.2 MiB/s |  44.4 KiB |  00m00s
[127/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 294.4 KiB/s |  10.0 KiB |  00m00s
[128/153] pkgconf-0:2.3.0-1.fc42.x86_64 100% |   1.3 MiB/s |  45.2 KiB |  00m00s
[129/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 462.0 KiB/s |  14.3 KiB |  00m00s
[130/153] libpkgconf-0:2.3.0-1.fc42.x86 100% |   1.1 MiB/s |  38.5 KiB |  00m00s
[131/153] gdbm-1:1.23-7.fc41.x86_64     100% |   3.7 MiB/s | 151.8 KiB |  00m00s
[132/153] libffi-0:3.4.6-3.fc42.x86_64  100% |   1.2 MiB/s |  40.0 KiB |  00m00s
[133/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% |   6.5 MiB/s | 490.9 KiB |  00m00s
[134/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% |   1.9 MiB/s |  74.2 KiB |  00m00s
[135/153] p11-kit-trust-0:0.25.5-3.fc41 100% |   3.0 MiB/s | 132.1 KiB |  00m00s
[136/153] fedora-release-0:42-0.3.noarc 100% | 394.4 KiB/s |  12.2 KiB |  00m00s
[137/153] xxhash-libs-0:0.8.2-3.fc41.x8 100% |   1.1 MiB/s |  37.1 KiB |  00m00s
[138/153] fedora-release-identity-basic 100% | 419.8 KiB/s |  13.0 KiB |  00m00s
[139/153] libcurl-0:8.10.0-1.fc42.x86_6 100% |   6.7 MiB/s | 369.0 KiB |  00m00s
[140/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% |   6.4 MiB/s | 340.5 KiB |  00m00s
[141/153] binutils-0:2.43.1-1.fc42.x86_ 100% |  14.1 MiB/s |   6.5 MiB |  00m00s
[142/153] libidn2-0:2.3.7-2.fc41.x86_64 100% |   3.1 MiB/s | 118.4 KiB |  00m00s
[143/153] libnghttp2-0:1.63.0-1.fc42.x8 100% |   1.7 MiB/s |  76.7 KiB |  00m00s
[144/153] libpsl-0:0.21.5-4.fc41.x86_64 100% |   1.6 MiB/s |  64.1 KiB |  00m00s
[145/153] gdb-minimal-0:15.1-2.fc42.x86 100% |  15.1 MiB/s |   4.3 MiB |  00m00s
[146/153] libssh-0:0.11.1-1.fc42.x86_64 100% |   5.0 MiB/s | 231.9 KiB |  00m00s
[147/153] publicsuffix-list-dafsa-0:202 100% |   1.8 MiB/s |  58.3 KiB |  00m00s
[148/153] libunistring-0:1.1-8.fc41.x86 100% |   7.7 MiB/s | 544.8 KiB |  00m00s
[149/153] openldap-0:2.6.8-5.fc41.x86_6 100% |   2.9 MiB/s | 255.6 KiB |  00m00s
[150/153] libssh-config-0:0.11.1-1.fc42 100% | 302.8 KiB/s |   9.4 KiB |  00m00s
[151/153] libtool-ltdl-0:2.4.7-12.fc41. 100% |   1.1 MiB/s |  35.6 KiB |  00m00s
[152/153] libevent-0:2.1.12-14.fc41.x86 100% |   6.0 MiB/s | 257.5 KiB |  00m00s
[153/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% |   4.0 MiB/s | 794.9 KiB |  00m00s
--------------------------------------------------------------------------------
[153/153] Total                         100% |  14.6 MiB/s |  53.1 MiB |  00m04s
Running transaction
Importing PGP key 0x105EF944:
 Userid     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0x105EF944:
 Userid     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0xE99D6AD1:
 Userid     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0x31645531:
 Userid     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/155] Verify package files          100% | 604.0   B/s | 153.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
[  2/155] Prepare transaction           100% |   1.4 KiB/s | 153.0   B |  00m00s
[  3/155] Installing libgcc-0:14.2.1-3. 100% |  89.9 MiB/s | 276.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.2.1-3.fc42.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.2.1-3.fc42.x86_64
[  4/155] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  5/155] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.4 KiB |  00m00s
[  6/155] Installing fedora-gpg-keys-0: 100% |  15.3 MiB/s | 172.2 KiB |  00m00s
[  7/155] Installing fedora-repos-0:42- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[  8/155] Installing fedora-release-com 100% |   7.7 MiB/s |  23.7 KiB |  00m00s
[  9/155] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 10/155] Installing setup-0:2.15.0-5.f 100% |  39.4 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 11/155] Installing filesystem-0:3.18- 100% |   1.6 MiB/s | 212.6 KiB |  00m00s
[ 12/155] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 13/155] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 14/155] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 15/155] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 17/155] Installing ncurses-base-0:6.5 100% |  34.3 MiB/s | 351.7 KiB |  00m00s
[ 18/155] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/155] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64
[ 20/155] Installing glibc-0:2.40.9000- 100% | 134.1 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64
>>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64
[ 21/155] Installing bash-0:5.2.32-2.fc 100% | 255.3 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64
[ 22/155] Installing glibc-common-0:2.4 100% | 116.4 MiB/s |   1.0 MiB |  00m00s
[ 23/155] Installing glibc-gconv-extra- 100% | 132.5 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.x86_64
[ 24/155] Installing zlib-ng-compat-0:2 100% | 135.5 MiB/s | 138.8 KiB |  00m00s
[ 25/155] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 26/155] Installing xz-libs-1:5.6.2-2. 100% | 105.2 MiB/s | 215.5 KiB |  00m00s
[ 27/155] Installing popt-0:1.19-7.fc41 100% |  35.0 MiB/s | 143.5 KiB |  00m00s
[ 28/155] Installing readline-0:8.2-11. 100% | 120.9 MiB/s | 495.3 KiB |  00m00s
[ 29/155] Installing libuuid-0:2.40.2-8 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 30/155] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB |  00m00s
[ 31/155] Installing gmp-1:6.3.0-2.fc41 100% | 198.6 MiB/s | 813.7 KiB |  00m00s
[ 32/155] Installing libattr-0:2.5.2-4. 100% |  28.8 MiB/s |  29.5 KiB |  00m00s
[ 33/155] Installing libacl-0:2.3.2-2.f 100% |  39.8 MiB/s |  40.7 KiB |  00m00s
[ 34/155] Installing libxcrypt-0:4.4.36 100% | 131.6 MiB/s | 269.5 KiB |  00m00s
[ 35/155] Installing libstdc++-0:14.2.1 100% | 231.2 MiB/s |   2.8 MiB |  00m00s
[ 36/155] Installing libzstd-0:1.5.6-2. 100% | 194.6 MiB/s | 797.2 KiB |  00m00s
[ 37/155] Installing elfutils-libelf-0: 100% |  73.1 MiB/s |   1.2 MiB |  00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.
>>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa
[ 38/155] Installing crypto-policies-0: 100% |  13.3 MiB/s | 163.2 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42
>>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no
[ 39/155] Installing libeconf-0:0.6.2-3 100% |  58.3 MiB/s |  59.7 KiB |  00m00s
[ 40/155] Installing gdbm-libs-1:1.23-7 100% |  60.3 MiB/s | 123.6 KiB |  00m00s
[ 41/155] Installing dwz-0:0.15-7.fc41. 100% | 142.7 MiB/s | 292.3 KiB |  00m00s
[ 42/155] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB |  00m00s
[ 43/155] Installing gawk-0:5.3.0-4.fc4 100% | 157.5 MiB/s |   1.7 MiB |  00m00s
[ 44/155] Installing unzip-0:6.0-64.fc4 100% | 127.0 MiB/s | 390.3 KiB |  00m00s
[ 45/155] Installing file-libs-0:5.45-7 100% | 451.5 MiB/s |   9.9 MiB |  00m00s
[ 46/155] Installing file-0:5.45-7.fc41 100% | 102.6 MiB/s | 105.0 KiB |  00m00s
[ 47/155] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB |  00m00s
[ 48/155] Installing grep-0:3.11-9.fc41 100% | 111.5 MiB/s |   1.0 MiB |  00m00s
[ 49/155] Installing xz-1:5.6.2-2.fc41. 100% | 109.5 MiB/s |   1.2 MiB |  00m00s
[ 50/155] Installing libcap-ng-0:0.8.5- 100% |  69.4 MiB/s |  71.0 KiB |  00m00s
[ 51/155] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB |  00m00s
[ 52/155] Installing pam-libs-0:1.6.1-6 100% |  69.0 MiB/s | 141.3 KiB |  00m00s
[ 53/155] Installing libcap-0:2.70-4.fc 100% |  55.0 MiB/s | 225.2 KiB |  00m00s
[ 54/155] Installing systemd-libs-0:256 100% | 226.0 MiB/s |   2.0 MiB |  00m00s
[ 55/155] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 56/155] Installing libsepol-0:3.7-3.f 100% | 200.0 MiB/s | 819.0 KiB |  00m00s
[ 57/155] Installing libselinux-0:3.7-6 100% |  89.0 MiB/s | 182.3 KiB |  00m00s
[ 58/155] Installing sed-0:4.9-3.fc41.x 100% | 121.3 MiB/s | 869.7 KiB |  00m00s
[ 59/155] Installing findutils-1:4.10.0 100% | 168.9 MiB/s |   1.9 MiB |  00m00s
[ 60/155] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB |  00m00s
[ 61/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 62/155] Installing lua-libs-0:5.4.6-6 100% | 139.8 MiB/s | 286.2 KiB |  00m00s
[ 63/155] Installing libcom_err-0:1.47. 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 64/155] Installing alternatives-0:1.3 100% |  66.3 MiB/s |  67.9 KiB |  00m00s
[ 65/155] Installing libtasn1-0:4.19.0- 100% |  86.7 MiB/s | 177.5 KiB |  00m00s
[ 66/155] Installing libunistring-0:1.1 100% | 247.2 MiB/s |   1.7 MiB |  00m00s
[ 67/155] Installing libidn2-0:2.3.7-2. 100% |  65.4 MiB/s | 335.1 KiB |  00m00s
[ 68/155] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 69/155] Installing zstd-0:1.5.6-2.fc4 100% | 241.6 MiB/s |   1.7 MiB |  00m00s
[ 70/155] Installing util-linux-core-0: 100% | 127.3 MiB/s |   1.5 MiB |  00m00s
[ 71/155] Installing tar-2:1.35-4.fc41. 100% | 211.3 MiB/s |   3.0 MiB |  00m00s
[ 72/155] Installing libsemanage-0:3.7- 100% |  97.6 MiB/s | 299.8 KiB |  00m00s
[ 73/155] Installing shadow-utils-2:4.1 100% | 121.9 MiB/s |   4.1 MiB |  00m00s
[ 74/155] Installing zip-0:3.0-41.fc41. 100% | 172.6 MiB/s | 707.1 KiB |  00m00s
[ 75/155] Installing gdbm-1:1.23-7.fc41 100% |  91.0 MiB/s | 465.8 KiB |  00m00s
[ 76/155] Installing cyrus-sasl-lib-0:2 100% | 230.6 MiB/s |   2.3 MiB |  00m00s
[ 77/155] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB |  00m00s
[ 78/155] Installing libxml2-0:2.12.8-2 100% | 244.6 MiB/s |   1.7 MiB |  00m00s
[ 79/155] Installing bzip2-0:1.0.8-19.f 100% |  48.9 MiB/s | 100.2 KiB |  00m00s
[ 80/155] Installing add-determinism-0: 100% | 249.6 MiB/s |   2.2 MiB |  00m00s
[ 81/155] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 82/155] Installing sqlite-libs-0:3.46 100% | 238.2 MiB/s |   1.4 MiB |  00m00s
[ 83/155] Installing ed-0:1.20.2-2.fc41 100% |  72.8 MiB/s | 149.2 KiB |  00m00s
[ 84/155] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB |  00m00s
[ 85/155] Installing elfutils-default-y 100% | 170.2 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 86/155] Installing cpio-0:2.15-2.fc41 100% | 122.2 MiB/s |   1.1 MiB |  00m00s
[ 87/155] Installing diffutils-0:3.10-8 100% | 159.0 MiB/s |   1.6 MiB |  00m00s
[ 88/155] Installing libgomp-0:14.2.1-3 100% | 171.0 MiB/s | 525.2 KiB |  00m00s
[ 89/155] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[ 90/155] Installing libverto-0:0.3.2-9 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[ 91/155] Installing jansson-0:2.13.1-1 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 92/155] Installing libpkgconf-0:2.3.0 100% |  77.5 MiB/s |  79.3 KiB |  00m00s
[ 93/155] Installing pkgconf-0:2.3.0-1. 100% |  44.5 MiB/s |  91.1 KiB |  00m00s
[ 94/155] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[ 95/155] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 96/155] Installing p11-kit-0:0.25.5-3 100% | 147.2 MiB/s |   2.2 MiB |  00m00s
[ 97/155] Installing p11-kit-trust-0:0. 100% |  25.6 MiB/s | 393.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
[ 98/155] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[ 99/155] Installing libbrotli-0:1.1.0- 100% | 164.0 MiB/s | 839.9 KiB |  00m00s
[100/155] Installing libnghttp2-0:1.63. 100% |  83.6 MiB/s | 171.2 KiB |  00m00s
[101/155] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[102/155] Installing rust-srpm-macros-0 100% |   5.4 MiB/s |   5.6 KiB |  00m00s
[103/155] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[104/155] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[105/155] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[106/155] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[107/155] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[108/155] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[109/155] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[110/155] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[111/155] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[112/155] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[113/155] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[114/155] Installing coreutils-common-0 100% | 243.3 MiB/s |  11.2 MiB |  00m00s
[115/155] Installing openssl-libs-1:3.2 100% | 301.1 MiB/s |   7.8 MiB |  00m00s
[116/155] Installing coreutils-0:9.5-9. 100% | 146.6 MiB/s |   5.7 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[117/155] Installing ca-certificates-0: 100% |   1.7 MiB/s |   2.4 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[118/155] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s |   2.3 MiB |  00m00s
[119/155] Installing libarchive-0:3.7.4 100% | 225.7 MiB/s | 924.6 KiB |  00m00s
[120/155] Installing libtirpc-0:1.3.5-0 100% |  66.6 MiB/s | 204.5 KiB |  00m00s
[121/155] Installing gzip-0:1.13-2.fc41 100% |  96.3 MiB/s | 394.6 KiB |  00m00s
[122/155] Installing authselect-libs-0: 100% |  81.4 MiB/s | 833.2 KiB |  00m00s
[123/155] Installing cracklib-0:2.9.11- 100% |  30.6 MiB/s | 250.3 KiB |  00m00s
[124/155] Installing libpwquality-0:1.4 100% |  52.5 MiB/s | 430.1 KiB |  00m00s
[125/155] Installing libnsl2-0:2.0.1-2. 100% |  28.8 MiB/s |  59.1 KiB |  00m00s
[126/155] Installing pam-0:1.6.1-6.fc42 100% |  75.1 MiB/s |   1.9 MiB |  00m00s
[127/155] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB |  00m00s
[128/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s |   2.4 MiB |  00m00s
[129/155] Installing rpm-libs-0:4.19.94 100% | 176.7 MiB/s | 723.6 KiB |  00m00s
[130/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB |  00m00s
[131/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB |  00m00s
[132/155] Installing libcurl-0:8.10.0-1 100% | 204.0 MiB/s | 835.4 KiB |  00m00s
[133/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB |  00m00s
[134/155] Installing elfutils-debuginfo 100% |  32.7 MiB/s |  66.9 KiB |  00m00s
[135/155] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s |   2.6 MiB |  00m00s
[136/155] Installing binutils-0:2.43.1- 100% | 267.3 MiB/s |  27.5 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64
>>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64
[137/155] Installing gdb-minimal-0:15.1 100% | 282.5 MiB/s |  13.0 MiB |  00m00s
[138/155] Installing debugedit-0:5.0-17 100% |  65.8 MiB/s | 202.0 KiB |  00m00s
[139/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB |  00m00s
[140/155] Installing curl-0:8.10.0-1.fc 100% |  22.3 MiB/s | 455.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.94-1.fc42.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.94-1.fc42.x86_64
[141/155] Installing rpm-0:4.19.94-1.fc 100% |  78.3 MiB/s |   2.5 MiB |  00m00s
[142/155] Installing efi-srpm-macros-0: 100% |  20.1 MiB/s |  41.2 KiB |  00m00s
[143/155] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[144/155] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[145/155] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[146/155] Installing forge-srpm-macros- 100% |  39.4 MiB/s |  40.4 KiB |  00m00s
[147/155] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[148/155] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[149/155] Installing redhat-rpm-config- 100% |  62.9 MiB/s | 193.2 KiB |  00m00s
[150/155] Installing rpm-build-0:4.19.9 100% |  39.6 MiB/s | 202.9 KiB |  00m00s
[151/155] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[152/155] Installing util-linux-0:2.40. 100% |  86.4 MiB/s |   3.7 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64
[153/155] Installing authselect-0:1.5.0 100% |  30.8 MiB/s | 157.9 KiB |  00m00s
[154/155] Installing which-0:2.21-42.fc 100% |  40.2 MiB/s |  82.4 KiB |  00m00s
[155/155] Installing info-0:7.1.1-1.fc4 100% | 200.7 KiB/s | 362.3 KiB |  00m02s
>>> Running post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.94-1.fc42.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.94-1.fc42.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64
>>> Running trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-7.fc41.x86_64
authselect-libs-1.5.0-7.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-2.fc42.x86_64
binutils-2.43.1-1.fc42.x86_64
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-9.fc42.x86_64
coreutils-common-9.5-9.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20240828-1.git5f66e81.fc42.noarch
curl-8.10.0-1.fc42.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.0-17.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-7.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.x86_64
elfutils-debuginfod-client-0.191-8.fc41.x86_64
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.x86_64
elfutils-libs-0.191-8.fc41.x86_64
fedora-gpg-keys-42-0.1.noarch
fedora-release-42-0.3.noarch
fedora-release-common-42-0.3.noarch
fedora-release-identity-basic-42-0.3.noarch
fedora-repos-42-0.1.noarch
fedora-repos-rawhide-42-0.1.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-29.fc42.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.1-2.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40.9000-1.fc42.x86_64
glibc-common-2.40.9000-1.fc42.x86_64
glibc-gconv-extra-2.40.9000-1.fc42.x86_64
glibc-minimal-langpack-2.40.9000-1.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1.1-1.fc42.x86_64
jansson-2.13.1-10.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-2.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-3.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc42.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-3.fc41.x86_64
libcurl-8.10.0-1.fc42.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-14.2.1-3.fc42.x86_64
libgomp-14.2.1-3.fc42.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc42.x86_64
libnghttp2-1.63.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-6.fc42.x86_64
libsemanage-3.7-3.fc42.x86_64
libsepol-3.7-3.fc42.x86_64
libsmartcols-2.40.2-8.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-3.fc42.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.5-0.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-7.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-8.fc42.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-6.fc42.x86_64
pam-libs-1.6.1-6.fc42.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-295-1.fc42.noarch
rpm-4.19.94-1.fc42.x86_64
rpm-build-4.19.94-1.fc42.x86_64
rpm-build-libs-4.19.94-1.fc42.x86_64
rpm-libs-4.19.94-1.fc42.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.16.0-3.fc42.x86_64
sqlite-libs-3.46.0-4.fc41.x86_64
systemd-libs-256.5-1.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc42.x86_64
util-linux-core-2.40.2-8.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-3.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-3.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Wrote: /builddir/build/SRPMS/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm

RPM build warnings:
    %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1726710516.152598/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1726710516.152598/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jcks_spe/R-CRAN-rxode2/R-CRAN-rxode2.spec) Config(child) 0 minutes 26 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm)  Config(fedora-rawhide-x86_64)
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1726710516.152598/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management from host and used with --installroot:
  rpm-4.19.1.1-1.fc39.x86_64
  rpm-sequoia-1.6.0-1.fc39.x86_64
  python3-dnf-4.21.1-1.fc39.noarch
  python3-dnf-plugins-core-4.9.0-1.fc39.noarch
  yum-4.21.1-1.fc39.noarch
  dnf5-5.1.17-2.fc39.x86_64
  dnf5-plugins-5.1.17-2.fc39.x86_64
Finish: chroot init
Start: build phase for R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
Start: build setup for R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
Building target platforms: x86_64
Building for target x86_64
warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Wrote: /builddir/build/SRPMS/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm

RPM build warnings:
    %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Updating and loading repositories:
 fedora                                 100% | 909.9 KiB/s |  24.6 KiB |  00m00s
 Copr repository                        100% |  26.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version                          Repository      Size
Installing:                                                                              
 R-CRAN-BH                   noarch 1.84.0.0-1.fc41.copr7349931      copr_base  121.0 MiB
 R-CRAN-PreciseSums          x86_64 0.7-1.fc42.copr8029450           copr_base   78.3 KiB
 R-CRAN-Rcpp                 x86_64 1.0.13-1.fc41.copr7745410        copr_base    8.4 MiB
 R-CRAN-RcppArmadillo        x86_64 14.0.2.1-1.fc42.copr8016517      copr_base    6.0 MiB
 R-CRAN-RcppEigen            x86_64 0.3.4.0.2-1.fc42.copr7940693     copr_base    9.0 MiB
 R-CRAN-RcppParallel         x86_64 5.1.9-1.fc42.copr7936852         copr_base    1.5 MiB
 R-CRAN-StanHeaders          x86_64 2.32.10-1.fc41.copr7736967       copr_base    9.7 MiB
 R-CRAN-backports            x86_64 1.5.0-1.fc41.copr7483453         copr_base  211.8 KiB
 R-CRAN-checkmate            x86_64 2.3.2-1.fc41.copr7803006         copr_base    1.4 MiB
 R-CRAN-cli                  x86_64 3.6.3-1.fc41.copr7649835         copr_base    2.4 MiB
 R-CRAN-data.table           x86_64 1.16.0-1.fc42.copr7948814        copr_base    3.9 MiB
 R-CRAN-dparser              x86_64 1.3.1.12-1.fc42.copr8029420      copr_base  869.1 KiB
 R-CRAN-ggplot2              noarch 3.5.1-1.fc41.copr7361224         copr_base    7.1 MiB
 R-CRAN-inline               noarch 0.3.19-1.fc41.copr7349930        copr_base  211.0 KiB
 R-CRAN-lotri                x86_64 1.0.0-1.fc42.copr8032936         copr_base  519.1 KiB
 R-CRAN-magrittr             x86_64 2.0.3-1.fc41.copr7349936         copr_base  417.3 KiB
 R-CRAN-memoise              noarch 2.0.1-1.fc41.copr7356088         copr_base   83.7 KiB
 R-CRAN-qs                   x86_64 0.26.3-1.fc41.copr7452074        copr_base    3.0 MiB
 R-CRAN-rex                  noarch 1.2.1-1.fc41.copr7353634         copr_base  247.9 KiB
 R-CRAN-rxode2ll             x86_64 2.0.11-1.fc41.copr7480751        copr_base  435.6 KiB
 R-CRAN-sitmo                x86_64 2.0.2-1.fc41.copr7353638         copr_base  883.1 KiB
 R-CRAN-sys                  x86_64 3.4.2-1.fc41.copr7349955         copr_base   79.4 KiB
 R-core                      x86_64 4.4.1-5.fc41                     fedora     101.5 MiB
 R-devel                     x86_64 4.4.1-5.fc41                     fedora       0.0   B
Installing dependencies:                                                                 
 R-CRAN-MASS                 x86_64 7.3.61-1.fc41.copr7613806        copr_base    1.8 MiB
 R-CRAN-Matrix               x86_64 1.7.0-1.fc41.copr7382390         copr_base    8.0 MiB
 R-CRAN-R6                   noarch 2.5.1-1.fc41.copr7349938         copr_base  115.9 KiB
 R-CRAN-RApiSerialize        x86_64 0.1.3-1.fc41.copr7445476         copr_base   35.1 KiB
 R-CRAN-RColorBrewer         noarch 1.1.3-1.fc41.copr7349948         copr_base   63.6 KiB
 R-CRAN-cachem               x86_64 1.1.0-1.fc41.copr7452047         copr_base  104.7 KiB
 R-CRAN-colorspace           x86_64 2.1.1-1.fc41.copr7795131         copr_base    4.0 MiB
 R-CRAN-crayon               noarch 1.5.3-1.fc41.copr7633037         copr_base  235.8 KiB
 R-CRAN-digest               x86_64 0.6.37-1.fc42.copr7936834        copr_base  495.7 KiB
 R-CRAN-fansi                x86_64 1.0.6-1.fc41.copr7349952         copr_base  625.8 KiB
 R-CRAN-farver               x86_64 2.1.2-1.fc41.copr7442181         copr_base    2.1 MiB
 R-CRAN-fastmap              x86_64 1.2.0-1.fc41.copr7447859         copr_base  108.5 KiB
 R-CRAN-glue                 x86_64 1.7.0-1.fc41.copr7349919         copr_base  261.2 KiB
 R-CRAN-gtable               noarch 0.3.5-1.fc41.copr7356060         copr_base  306.7 KiB
 R-CRAN-isoband              x86_64 0.2.7-1.fc41.copr7351195         copr_base    1.9 MiB
 R-CRAN-labeling             noarch 0.4.3-1.fc41.copr7349947         copr_base   92.7 KiB
 R-CRAN-lattice              x86_64 0.22.6-1.fc41.copr7352639        copr_base    2.0 MiB
 R-CRAN-lazyeval             x86_64 0.2.2-3.fc41.copr7349927         copr_base  362.3 KiB
 R-CRAN-lifecycle            noarch 1.0.4-1.fc41.copr7354340         copr_base  282.7 KiB
 R-CRAN-mgcv                 x86_64 1.9.1-1.fc41.copr7357272         copr_base    4.5 MiB
 R-CRAN-munsell              noarch 0.5.1-1.fc41.copr7353599         copr_base  379.0 KiB
 R-CRAN-nlme                 x86_64 3.1.166-1.fc42.copr7936970       copr_base    3.8 MiB
 R-CRAN-pillar               noarch 1.9.0-1.fc41.copr7357931         copr_base    1.4 MiB
 R-CRAN-pkgconfig            noarch 2.0.3-3.fc41.copr7349937         copr_base   34.0 KiB
 R-CRAN-rlang                x86_64 1.1.4-1.fc41.copr7531082         copr_base    2.6 MiB
 R-CRAN-scales               noarch 1.3.0-1.fc41.copr7356067         copr_base    1.1 MiB
 R-CRAN-stringfish           x86_64 0.16.0-1.fc41.copr7355169        copr_base  807.6 KiB
 R-CRAN-tibble               x86_64 3.2.1-1.fc41.copr7359525         copr_base    1.7 MiB
 R-CRAN-utf8                 x86_64 1.2.4-1.fc41.copr7349954         copr_base  470.9 KiB
 R-CRAN-vctrs                x86_64 0.6.5-1.fc41.copr7356070         copr_base    2.3 MiB
 R-CRAN-viridisLite          noarch 0.4.2-1.fc41.copr7349928         copr_base    1.3 MiB
 R-CRAN-withr                noarch 3.0.1-1.fc41.copr7810684         copr_base  397.2 KiB
 R-core-devel                x86_64 4.4.1-5.fc41                     fedora     394.7 KiB
 R-java                      x86_64 4.4.1-5.fc41                     fedora       0.0   B
 R-java-devel                x86_64 4.4.1-5.fc41                     fedora       0.0   B
 R-littler                   x86_64 0.3.19-5.fc41                    fedora     158.1 KiB
 R-rpm-macros                noarch 1.2.1-11.fc41                    fedora       5.6 KiB
 abattis-cantarell-vf-fonts  noarch 0.301-13.fc41                    fedora     192.7 KiB
 alsa-lib                    x86_64 1.2.12-2.fc41                    fedora       1.4 MiB
 annobin-docs                noarch 12.70-1.fc42                     fedora      97.7 KiB
 annobin-plugin-gcc          x86_64 12.70-1.fc42                     fedora     985.6 KiB
 avahi-libs                  x86_64 0.8-30.fc42                      fedora     174.2 KiB
 brotli                      x86_64 1.1.0-5.fc41                     fedora      31.8 KiB
 brotli-devel                x86_64 1.1.0-5.fc41                     fedora      65.6 KiB
 bzip2-devel                 x86_64 1.0.8-19.fc41                    fedora     309.8 KiB
 cairo                       x86_64 1.18.0-4.fc41                    fedora       1.7 MiB
 cairo-devel                 x86_64 1.18.0-4.fc41                    fedora       2.3 MiB
 cmake-filesystem            x86_64 3.28.3-7.fc41                    fedora       0.0   B
 copy-jdk-configs            noarch 4.1-6.fc41                       fedora      20.3 KiB
 cpp                         x86_64 14.2.1-3.fc42                    fedora      35.0 MiB
 cups-libs                   x86_64 1:2.4.10-6.fc42                  fedora     622.9 KiB
 dbus-libs                   x86_64 1:1.14.10-4.fc41                 fedora     368.9 KiB
 default-fonts-core-sans     noarch 4.1-3.fc42                       fedora      11.9 KiB
 desktop-file-utils          x86_64 0.27-2.fc41                      fedora     230.4 KiB
 emacs-filesystem            noarch 1:30.0-3.fc41                    fedora       0.0   B
 expat                       x86_64 2.6.3-1.fc42                     fedora     291.5 KiB
 flexiblas                   x86_64 3.4.4-3.fc41                     fedora      48.5 KiB
 flexiblas-devel             x86_64 3.4.4-3.fc41                     fedora       4.8 MiB
 flexiblas-netlib            x86_64 3.4.4-3.fc41                     fedora      10.7 MiB
 flexiblas-netlib64          x86_64 3.4.4-3.fc41                     fedora      10.8 MiB
 flexiblas-openblas-openmp   x86_64 3.4.4-3.fc41                     fedora      43.3 KiB
 flexiblas-openblas-openmp64 x86_64 3.4.4-3.fc41                     fedora      43.3 KiB
 fontconfig                  x86_64 2.15.0-8.fc41                    fedora     791.9 KiB
 fontconfig-devel            x86_64 2.15.0-8.fc41                    fedora     117.2 KiB
 fonts-filesystem            noarch 1:2.0.5-17.fc41                  fedora       0.0   B
 freetype                    x86_64 2.13.2-6.fc41                    fedora     850.6 KiB
 freetype-devel              x86_64 2.13.2-6.fc41                    fedora       7.8 MiB
 fribidi                     x86_64 1.0.15-2.fc41                    fedora     368.4 KiB
 gcc                         x86_64 14.2.1-3.fc42                    fedora     104.4 MiB
 gcc-c++                     x86_64 14.2.1-3.fc42                    fedora      38.2 MiB
 gcc-gfortran                x86_64 14.2.1-3.fc42                    fedora      37.2 MiB
 gcc-plugin-annobin          x86_64 14.2.1-3.fc42                    fedora      61.1 KiB
 gettext                     x86_64 0.22.5-6.fc41                    fedora       5.2 MiB
 gettext-envsubst            x86_64 0.22.5-6.fc41                    fedora      74.9 KiB
 gettext-libs                x86_64 0.22.5-6.fc41                    fedora       1.7 MiB
 gettext-runtime             x86_64 0.22.5-6.fc41                    fedora     481.3 KiB
 glib2                       x86_64 2.82.0-1.fc42                    fedora      14.7 MiB
 glib2-devel                 x86_64 2.82.0-1.fc42                    fedora      15.7 MiB
 glibc-devel                 x86_64 2.40.9000-1.fc42                 fedora      37.8 KiB
 glibc-headers-x86           noarch 2.40.9000-1.fc42                 fedora       2.2 MiB
 gnutls                      x86_64 3.8.7-4.fc42                     fedora       3.2 MiB
 google-noto-fonts-common    noarch 20240901-1.fc42                  fedora      17.5 KiB
 google-noto-sans-vf-fonts   noarch 20240901-1.fc42                  fedora       1.2 MiB
 graphite2                   x86_64 1.3.14-16.fc41                   fedora     192.0 KiB
 graphite2-devel             x86_64 1.3.14-16.fc41                   fedora      49.1 KiB
 harfbuzz                    x86_64 9.0.0-3.fc42                     fedora       2.6 MiB
 harfbuzz-cairo              x86_64 9.0.0-3.fc42                     fedora      52.2 KiB
 harfbuzz-devel              x86_64 9.0.0-3.fc42                     fedora       5.1 MiB
 harfbuzz-icu                x86_64 9.0.0-3.fc42                     fedora      19.5 KiB
 hwloc-libs                  x86_64 2.11.1-3.fc42                    fedora       2.9 MiB
 java-21-openjdk             x86_64 1:21.0.4.0.7-2.fc41              fedora       1.1 MiB
 java-21-openjdk-devel       x86_64 1:21.0.4.0.7-2.fc41              fedora      11.2 MiB
 java-21-openjdk-headless    x86_64 1:21.0.4.0.7-2.fc41              fedora     204.9 MiB
 javapackages-filesystem     noarch 6.2.0-27.fc42                    fedora       1.9 KiB
 jbigkit-libs                x86_64 2.1-30.fc41                      fedora     117.6 KiB
 kernel-headers              x86_64 6.11.0-63.fc42                   fedora       6.4 MiB
 less                        x86_64 661-2.fc41                       fedora     405.3 KiB
 libICE                      x86_64 1.1.1-4.fc41                     fedora     181.2 KiB
 libRmath                    x86_64 4.4.1-5.fc41                     fedora     246.8 KiB
 libRmath-devel              x86_64 4.4.1-5.fc41                     fedora      17.4 KiB
 libSM                       x86_64 1.2.4-4.fc41                     fedora      97.3 KiB
 libX11                      x86_64 1.8.10-2.fc42                    fedora       1.3 MiB
 libX11-common               noarch 1.8.10-2.fc42                    fedora       1.1 MiB
 libX11-devel                x86_64 1.8.10-2.fc42                    fedora       1.0 MiB
 libX11-xcb                  x86_64 1.8.10-2.fc42                    fedora      15.0 KiB
 libXau                      x86_64 1.0.11-7.fc41                    fedora      66.9 KiB
 libXau-devel                x86_64 1.0.11-7.fc41                    fedora       6.4 KiB
 libXcomposite               x86_64 0.4.6-4.fc41                     fedora      44.5 KiB
 libXext                     x86_64 1.3.6-2.fc41                     fedora      90.1 KiB
 libXext-devel               x86_64 1.3.6-2.fc41                     fedora      98.9 KiB
 libXft                      x86_64 2.3.8-7.fc41                     fedora     164.5 KiB
 libXft-devel                x86_64 2.3.8-7.fc41                     fedora      31.7 KiB
 libXi                       x86_64 1.8.2-1.fc42                     fedora      80.7 KiB
 libXmu                      x86_64 1.2.1-2.fc41                     fedora     191.5 KiB
 libXrender                  x86_64 0.9.11-7.fc41                    fedora      50.1 KiB
 libXrender-devel            x86_64 0.9.11-7.fc41                    fedora      50.1 KiB
 libXt                       x86_64 1.3.0-4.fc41                     fedora     429.9 KiB
 libXtst                     x86_64 1.2.5-1.fc41                     fedora      33.6 KiB
 libb2                       x86_64 0.98.1-12.fc41                   fedora      42.2 KiB
 libblkid-devel              x86_64 2.40.2-8.fc42                    fedora      44.9 KiB
 libdatrie                   x86_64 0.2.13-10.fc41                   fedora      57.9 KiB
 libdeflate                  x86_64 1.21-2.fc41                      fedora     117.0 KiB
 libdeflate-devel            x86_64 1.21-2.fc41                      fedora      25.7 KiB
 libffi-devel                x86_64 3.4.6-3.fc42                     fedora      33.1 KiB
 libfontenc                  x86_64 1.1.8-2.fc41                     fedora      67.0 KiB
 libgfortran                 x86_64 14.2.1-3.fc42                    fedora       3.0 MiB
 libicu                      x86_64 74.2-2.fc41                      fedora      34.9 MiB
 libicu-devel                x86_64 74.2-2.fc41                      fedora       5.6 MiB
 libjpeg-turbo               x86_64 3.0.2-3.fc41                     fedora     776.9 KiB
 liblerc                     x86_64 4.0.0-7.fc41                     fedora     607.5 KiB
 libmount-devel              x86_64 2.40.2-8.fc42                    fedora      63.5 KiB
 libmpc                      x86_64 1.3.1-6.fc41                     fedora     164.7 KiB
 libpng                      x86_64 2:1.6.40-4.fc41                  fedora     245.8 KiB
 libpng-devel                x86_64 2:1.6.40-4.fc41                  fedora     881.5 KiB
 libquadmath                 x86_64 14.2.1-3.fc42                    fedora     325.9 KiB
 libquadmath-devel           x86_64 14.2.1-3.fc42                    fedora      21.9 KiB
 libselinux-devel            x86_64 3.7-6.fc42                       fedora     126.5 KiB
 libsepol-devel              x86_64 3.7-3.fc42                       fedora     120.3 KiB
 libstdc++-devel             x86_64 14.2.1-3.fc42                    fedora      15.4 MiB
 libtextstyle                x86_64 0.22.5-6.fc41                    fedora     195.6 KiB
 libthai                     x86_64 0.1.29-9.fc41                    fedora     783.5 KiB
 libtiff                     x86_64 4.6.0-6.fc42                     fedora     606.0 KiB
 libtirpc-devel              x86_64 1.3.5-0.fc41                     fedora     251.6 KiB
 libwebp                     x86_64 1.4.0-4.fc41                     fedora     822.6 KiB
 libxcb                      x86_64 1.17.0-2.fc41                    fedora       1.1 MiB
 libxcb-devel                x86_64 1.17.0-2.fc41                    fedora       2.7 MiB
 libxcrypt-devel             x86_64 4.4.36-7.fc41                    fedora      30.3 KiB
 libxml2-devel               x86_64 2.12.8-2.fc41                    fedora       3.4 MiB
 lksctp-tools                x86_64 1.0.19-9.fc41                    fedora     275.2 KiB
 lua                         x86_64 5.4.6-6.fc41                     fedora     601.7 KiB
 lua-posix                   x86_64 36.2.1-7.fc41                    fedora     599.8 KiB
 make                        x86_64 1:4.4.1-8.fc41                   fedora       1.8 MiB
 mkfontscale                 x86_64 1.2.3-1.fc41                     fedora      49.2 KiB
 mpdecimal                   x86_64 2.5.1-16.fc41                    fedora     204.9 KiB
 nettle                      x86_64 3.10-3.fc41                      fedora     793.0 KiB
 nspr                        x86_64 4.35.0-29.fc42                   fedora     320.4 KiB
 nss                         x86_64 3.104.0-1.fc42                   fedora       1.9 MiB
 nss-softokn                 x86_64 3.104.0-1.fc42                   fedora       1.9 MiB
 nss-softokn-freebl          x86_64 3.104.0-1.fc42                   fedora     783.6 KiB
 nss-sysinit                 x86_64 3.104.0-1.fc42                   fedora      22.2 KiB
 nss-util                    x86_64 3.104.0-1.fc42                   fedora     205.1 KiB
 openblas                    x86_64 0.3.26-5.fc41                    fedora      96.0 KiB
 openblas-openmp             x86_64 0.3.26-5.fc41                    fedora      39.4 MiB
 openblas-openmp64           x86_64 0.3.26-5.fc41                    fedora      39.5 MiB
 pango                       x86_64 1.54.0-2.fc41                    fedora     996.2 KiB
 pcre2-devel                 x86_64 10.44-1.fc41.1                   fedora       2.0 MiB
 pcre2-utf16                 x86_64 10.44-1.fc41.1                   fedora     590.1 KiB
 pcre2-utf32                 x86_64 10.44-1.fc41.1                   fedora     562.0 KiB
 pixman                      x86_64 0.43.4-2.fc41                    fedora     718.1 KiB
 pixman-devel                x86_64 0.43.4-2.fc41                    fedora      49.4 KiB
 python-pip-wheel            noarch 24.2-1.fc41                      fedora       1.2 MiB
 python3                     x86_64 3.13.0~rc2-1.fc42                fedora      31.8 KiB
 python3-libs                x86_64 3.13.0~rc2-1.fc42                fedora      40.3 MiB
 python3-packaging           noarch 24.1-2.fc41                      fedora     422.3 KiB
 sysprof-capture-devel       x86_64 47.0-1.fc42                      fedora     273.2 KiB
 tbb                         x86_64 2021.13.0-2.fc41                 fedora     440.8 KiB
 tbb-bind                    x86_64 2021.13.0-2.fc41                 fedora      23.7 KiB
 tbb-devel                   x86_64 2021.13.0-2.fc41                 fedora       1.3 MiB
 tcl                         x86_64 1:8.6.14-2.fc41                  fedora       4.2 MiB
 tcl-devel                   x86_64 1:8.6.14-2.fc41                  fedora     791.3 KiB
 tk                          x86_64 1:8.6.14-2.fc41                  fedora       3.6 MiB
 tk-devel                    x86_64 1:8.6.14-2.fc41                  fedora     984.9 KiB
 tre                         x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora      75.9 KiB
 tre-common                  noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora      81.0 KiB
 tre-devel                   x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora      10.7 KiB
 ttmkfdir                    x86_64 3.0.9-71.fc41                    fedora     122.7 KiB
 tzdata                      noarch 2024a-9.fc41                     fedora       1.7 MiB
 tzdata-java                 noarch 2024a-9.fc41                     fedora     101.7 KiB
 xdg-utils                   noarch 1.2.1-2.fc41                     fedora     346.3 KiB
 xml-common                  noarch 0.6.3-65.fc41                    fedora      78.4 KiB
 xorg-x11-fonts-Type1        noarch 7.5-39.fc41                      fedora     863.3 KiB
 xorg-x11-proto-devel        noarch 2024.1-3.fc41                    fedora       1.7 MiB
 xz-devel                    x86_64 1:5.6.2-2.fc41                   fedora     255.6 KiB
 zlib-ng-compat-devel        x86_64 2.1.7-3.fc42                     fedora     106.8 KiB

Transaction Summary:
 Installing:      218 packages

Total size of inbound packages is 330 MiB. Need to download 330 MiB.
After this operation 1 GiB will be used (install 1 GiB, remove 0 B).
[  1/218] R-CRAN-PreciseSums-0:0.7-1.fc 100% | 260.7 KiB/s |  49.3 KiB |  00m00s
[  2/218] R-CRAN-RcppArmadillo-0:14.0.2 100% |  12.2 MiB/s | 921.9 KiB |  00m00s
[  3/218] R-CRAN-RcppEigen-0:0.3.4.0.2- 100% |  12.7 MiB/s |   1.4 MiB |  00m00s
[  4/218] R-CRAN-Rcpp-0:1.0.13-1.fc41.c 100% |   5.2 MiB/s |   2.0 MiB |  00m00s
[  5/218] R-CRAN-BH-0:1.84.0.0-1.fc41.c 100% |  20.5 MiB/s |   9.8 MiB |  00m00s
[  6/218] R-CRAN-StanHeaders-0:2.32.10- 100% |  17.1 MiB/s |   1.6 MiB |  00m00s
[  7/218] R-CRAN-RcppParallel-0:5.1.9-1 100% |   2.5 MiB/s | 328.8 KiB |  00m00s
[  8/218] R-CRAN-checkmate-0:2.3.2-1.fc 100% |  15.0 MiB/s | 766.6 KiB |  00m00s
[  9/218] R-CRAN-data.table-0:1.16.0-1. 100% |  29.6 MiB/s |   2.1 MiB |  00m00s
[ 10/218] R-CRAN-dparser-0:1.3.1.12-1.f 100% |   2.4 MiB/s | 349.6 KiB |  00m00s
[ 11/218] R-CRAN-inline-0:0.3.19-1.fc41 100% |   6.2 MiB/s | 144.9 KiB |  00m00s
[ 12/218] R-CRAN-backports-0:1.5.0-1.fc 100% | 581.9 KiB/s | 140.8 KiB |  00m00s
[ 13/218] R-CRAN-ggplot2-0:3.5.1-1.fc41 100% |  31.2 MiB/s |   4.7 MiB |  00m00s
[ 14/218] R-CRAN-lotri-0:1.0.0-1.fc42.c 100% |   6.9 MiB/s | 365.8 KiB |  00m00s
[ 15/218] R-CRAN-memoise-0:2.0.1-1.fc41 100% |   1.7 MiB/s |  62.5 KiB |  00m00s
[ 16/218] R-CRAN-rex-0:1.2.1-1.fc41.cop 100% | 885.9 KiB/s | 139.1 KiB |  00m00s
[ 17/218] R-CRAN-rxode2ll-0:2.0.11-1.fc 100% | 603.2 KiB/s | 188.8 KiB |  00m00s
[ 18/218] R-CRAN-sys-0:3.4.2-1.fc41.cop 100% |   3.1 MiB/s |  57.4 KiB |  00m00s
[ 19/218] R-CRAN-qs-0:0.26.3-1.fc41.cop 100% |   3.8 MiB/s |   1.4 MiB |  00m00s
[ 20/218] R-CRAN-sitmo-0:2.0.2-1.fc41.c 100% | 728.5 KiB/s | 143.5 KiB |  00m00s
[ 21/218] R-CRAN-magrittr-0:2.0.3-1.fc4 100% |  10.9 MiB/s | 222.7 KiB |  00m00s
[ 22/218] R-CRAN-cli-0:3.6.3-1.fc41.cop 100% |  17.3 MiB/s |   1.3 MiB |  00m00s
[ 23/218] R-devel-0:4.4.1-5.fc41.x86_64 100% |  83.6 KiB/s |  10.5 KiB |  00m00s
[ 24/218] R-littler-0:0.3.19-5.fc41.x86 100% | 319.7 KiB/s |  71.3 KiB |  00m00s
[ 25/218] tbb-0:2021.13.0-2.fc41.x86_64 100% |   1.5 MiB/s | 164.2 KiB |  00m00s
[ 26/218] R-CRAN-digest-0:0.6.37-1.fc42 100% |   9.3 MiB/s | 229.7 KiB |  00m00s
[ 27/218] R-CRAN-MASS-0:7.3.61-1.fc41.c 100% |  14.4 MiB/s |   1.2 MiB |  00m00s
[ 28/218] R-CRAN-glue-0:1.7.0-1.fc41.co 100% |   7.7 MiB/s | 166.3 KiB |  00m00s
[ 29/218] flexiblas-netlib-0:3.4.4-3.fc 100% |   8.1 MiB/s |   3.2 MiB |  00m00s
[ 30/218] R-CRAN-gtable-0:0.3.5-1.fc41. 100% |   7.5 MiB/s | 230.3 KiB |  00m00s
[ 31/218] R-CRAN-lifecycle-0:1.0.4-1.fc 100% |   3.2 MiB/s | 130.2 KiB |  00m00s
[ 32/218] R-CRAN-isoband-0:0.2.7-1.fc41 100% |  16.4 MiB/s |   1.6 MiB |  00m00s
[ 33/218] R-CRAN-mgcv-0:1.9.1-1.fc41.co 100% |  20.3 MiB/s |   3.2 MiB |  00m00s
[ 34/218] R-CRAN-rlang-0:1.1.4-1.fc41.c 100% |  11.7 MiB/s |   1.7 MiB |  00m00s
[ 35/218] R-CRAN-scales-0:1.3.0-1.fc41. 100% |  22.2 MiB/s | 704.1 KiB |  00m00s
[ 36/218] R-CRAN-tibble-0:3.2.1-1.fc41. 100% |  17.1 MiB/s | 630.8 KiB |  00m00s
[ 37/218] R-CRAN-vctrs-0:0.6.5-1.fc41.c 100% |  20.0 MiB/s |   1.3 MiB |  00m00s
[ 38/218] R-CRAN-withr-0:3.0.1-1.fc41.c 100% |   4.6 MiB/s | 250.1 KiB |  00m00s
[ 39/218] R-CRAN-cachem-0:1.1.0-1.fc41. 100% |   4.7 MiB/s |  81.3 KiB |  00m00s
[ 40/218] R-CRAN-crayon-0:1.5.3-1.fc41. 100% |   6.8 MiB/s | 181.7 KiB |  00m00s
[ 41/218] R-CRAN-RApiSerialize-0:0.1.3- 100% | 250.7 KiB/s |  29.1 KiB |  00m00s
[ 42/218] R-CRAN-lazyeval-0:0.2.2-3.fc4 100% |   5.2 MiB/s | 166.3 KiB |  00m00s
[ 43/218] R-CRAN-stringfish-0:0.16.0-1. 100% |   2.7 MiB/s | 415.1 KiB |  00m00s
[ 44/218] R-core-devel-0:4.4.1-5.fc41.x 100% |   1.3 MiB/s |  95.5 KiB |  00m00s
[ 45/218] R-java-devel-0:4.4.1-5.fc41.x 100% | 116.9 KiB/s |  10.5 KiB |  00m00s
[ 46/218] R-rpm-macros-0:1.2.1-11.fc41. 100% | 184.7 KiB/s |  11.3 KiB |  00m00s
[ 47/218] cairo-0:1.18.0-4.fc41.x86_64  100% |   5.3 MiB/s | 709.9 KiB |  00m00s
[ 48/218] glib2-0:2.82.0-1.fc42.x86_64  100% |  22.4 MiB/s |   3.0 MiB |  00m00s
[ 49/218] less-0:661-2.fc41.x86_64      100% |   2.4 MiB/s | 188.5 KiB |  00m00s
[ 50/218] libRmath-0:4.4.1-5.fc41.x86_6 100% |   1.1 MiB/s | 123.9 KiB |  00m00s
[ 51/218] libX11-0:1.8.10-2.fc42.x86_64 100% |   7.1 MiB/s | 649.7 KiB |  00m00s
[ 52/218] libXt-0:1.3.0-4.fc41.x86_64   100% |   4.7 MiB/s | 177.4 KiB |  00m00s
[ 53/218] libdeflate-0:1.21-2.fc41.x86_ 100% |   1.7 MiB/s |  67.4 KiB |  00m00s
[ 54/218] libXmu-0:1.2.1-2.fc41.x86_64  100% | 394.1 KiB/s |  78.0 KiB |  00m00s
[ 55/218] libjpeg-turbo-0:3.0.2-3.fc41. 100% |   6.3 MiB/s | 227.3 KiB |  00m00s
[ 56/218] R-core-0:4.4.1-5.fc41.x86_64  100% |  37.8 MiB/s |  65.3 MiB |  00m02s
[ 57/218] libicu-0:74.2-2.fc41.x86_64   100% |  35.8 MiB/s |  10.4 MiB |  00m00s
[ 58/218] libpng-2:1.6.40-4.fc41.x86_64 100% | 853.1 KiB/s | 120.3 KiB |  00m00s
[ 59/218] libtiff-0:4.6.0-6.fc42.x86_64 100% |   3.8 MiB/s | 212.0 KiB |  00m00s
[ 60/218] tcl-1:8.6.14-2.fc41.x86_64    100% |  14.3 MiB/s |   1.1 MiB |  00m00s
[ 61/218] pango-0:1.54.0-2.fc41.x86_64  100% |   3.7 MiB/s | 347.5 KiB |  00m00s
[ 62/218] tre-0:0.8.0-45.20140228gitc2f 100% | 910.3 KiB/s |  43.7 KiB |  00m00s
[ 63/218] tk-1:8.6.14-2.fc41.x86_64     100% |  12.3 MiB/s |   1.6 MiB |  00m00s
[ 64/218] xdg-utils-0:1.2.1-2.fc41.noar 100% |   1.1 MiB/s |  79.3 KiB |  00m00s
[ 65/218] flexiblas-0:3.4.4-3.fc41.x86_ 100% | 549.7 KiB/s |  25.3 KiB |  00m00s
[ 66/218] flexiblas-openblas-openmp-0:3 100% | 442.2 KiB/s |  17.2 KiB |  00m00s
[ 67/218] libgfortran-0:14.2.1-3.fc42.x 100% |  21.3 MiB/s | 937.7 KiB |  00m00s
[ 68/218] libquadmath-0:14.2.1-3.fc42.x 100% |   5.7 MiB/s | 202.5 KiB |  00m00s
[ 69/218] R-CRAN-R6-0:2.5.1-1.fc41.copr 100% |   5.2 MiB/s |  95.5 KiB |  00m00s
[ 70/218] R-CRAN-RColorBrewer-0:1.1.3-1 100% |   3.4 MiB/s |  62.7 KiB |  00m00s
[ 71/218] R-CRAN-farver-0:2.1.2-1.fc41. 100% |  35.1 MiB/s |   1.3 MiB |  00m00s
[ 72/218] R-CRAN-nlme-0:3.1.166-1.fc42. 100% |  23.8 MiB/s |   2.4 MiB |  00m00s
[ 73/218] R-CRAN-labeling-0:0.4.3-1.fc4 100% |   2.7 MiB/s |  76.2 KiB |  00m00s
[ 74/218] R-CRAN-munsell-0:0.5.1-1.fc41 100% |   8.5 MiB/s | 251.0 KiB |  00m00s
[ 75/218] R-CRAN-fansi-0:1.0.6-1.fc41.c 100% |  12.6 MiB/s | 349.2 KiB |  00m00s
[ 76/218] R-CRAN-viridisLite-0:0.4.2-1. 100% |  14.7 MiB/s |   1.2 MiB |  00m00s
[ 77/218] R-CRAN-pillar-0:1.9.0-1.fc41. 100% |  15.2 MiB/s | 623.3 KiB |  00m00s
[ 78/218] R-CRAN-pkgconfig-0:2.0.3-3.fc 100% |   2.1 MiB/s |  30.0 KiB |  00m00s
[ 79/218] R-CRAN-Matrix-0:1.7.0-1.fc41. 100% |  18.4 MiB/s |   4.3 MiB |  00m00s
[ 80/218] R-CRAN-fastmap-0:1.2.0-1.fc41 100% |   4.5 MiB/s |  78.2 KiB |  00m00s
[ 81/218] libRmath-devel-0:4.4.1-5.fc41 100% | 281.5 KiB/s |  16.0 KiB |  00m00s
[ 82/218] R-java-0:4.4.1-5.fc41.x86_64  100% | 178.0 KiB/s |  11.0 KiB |  00m00s
[ 83/218] make-1:4.4.1-8.fc41.x86_64    100% |   6.4 MiB/s | 586.1 KiB |  00m00s
[ 84/218] fontconfig-0:2.15.0-8.fc41.x8 100% |   5.2 MiB/s | 269.9 KiB |  00m00s
[ 85/218] java-21-openjdk-devel-1:21.0. 100% |  34.8 MiB/s |   5.0 MiB |  00m00s
[ 86/218] libXext-0:1.3.6-2.fc41.x86_64 100% | 454.4 KiB/s |  39.1 KiB |  00m00s
[ 87/218] freetype-0:2.13.2-6.fc41.x86_ 100% |   3.1 MiB/s | 410.7 KiB |  00m00s
[ 88/218] libXrender-0:0.9.11-7.fc41.x8 100% | 859.5 KiB/s |  27.5 KiB |  00m00s
[ 89/218] libxcb-0:1.17.0-2.fc41.x86_64 100% |   4.8 MiB/s | 239.0 KiB |  00m00s
[ 90/218] pixman-0:0.43.4-2.fc41.x86_64 100% |   5.4 MiB/s | 294.1 KiB |  00m00s
[ 91/218] gnutls-0:3.8.7-4.fc42.x86_64  100% |  16.2 MiB/s |   1.1 MiB |  00m00s
[ 92/218] libICE-0:1.1.1-4.fc41.x86_64  100% |   2.1 MiB/s |  74.7 KiB |  00m00s
[ 93/218] libX11-common-0:1.8.10-2.fc42 100% |   3.2 MiB/s | 175.9 KiB |  00m00s
[ 94/218] libSM-0:1.2.4-4.fc41.x86_64   100% |   1.3 MiB/s |  43.2 KiB |  00m00s
[ 95/218] liblerc-0:4.0.0-7.fc41.x86_64 100% |   5.9 MiB/s | 210.3 KiB |  00m00s
[ 96/218] jbigkit-libs-0:2.1-30.fc41.x8 100% |   1.0 MiB/s |  53.3 KiB |  00m00s
[ 97/218] libwebp-0:1.4.0-4.fc41.x86_64 100% |   5.5 MiB/s | 292.0 KiB |  00m00s
[ 98/218] fribidi-0:1.0.15-2.fc41.x86_6 100% |   1.8 MiB/s |  92.2 KiB |  00m00s
[ 99/218] libXft-0:2.3.8-7.fc41.x86_64  100% |   2.0 MiB/s |  72.3 KiB |  00m00s
[100/218] harfbuzz-0:9.0.0-3.fc42.x86_6 100% |  17.1 MiB/s |   1.0 MiB |  00m00s
[101/218] libthai-0:0.1.29-9.fc41.x86_6 100% |   4.1 MiB/s | 211.8 KiB |  00m00s
[102/218] tre-common-0:0.8.0-45.2014022 100% | 712.4 KiB/s |  31.3 KiB |  00m00s
[103/218] desktop-file-utils-0:0.27-2.f 100% |   1.3 MiB/s |  68.9 KiB |  00m00s
[104/218] R-CRAN-lattice-0:0.22.6-1.fc4 100% |  32.4 MiB/s |   1.4 MiB |  00m00s
[105/218] R-CRAN-utf8-0:1.2.4-1.fc41.co 100% |   2.9 MiB/s | 150.1 KiB |  00m00s
[106/218] R-CRAN-colorspace-0:2.1.1-1.f 100% |  27.4 MiB/s |   2.5 MiB |  00m00s
[107/218] openblas-openmp-0:0.3.26-5.fc 100% |  31.1 MiB/s |   5.1 MiB |  00m00s
[108/218] default-fonts-core-sans-0:4.1 100% | 306.8 KiB/s |  31.0 KiB |  00m00s
[109/218] java-21-openjdk-1:21.0.4.0.7- 100% |   2.5 MiB/s | 426.5 KiB |  00m00s
[110/218] fonts-filesystem-1:2.0.5-17.f 100% | 265.1 KiB/s |   8.5 KiB |  00m00s
[111/218] libXau-0:1.0.11-7.fc41.x86_64 100% | 370.8 KiB/s |  31.9 KiB |  00m00s
[112/218] xml-common-0:0.6.3-65.fc41.no 100% | 291.9 KiB/s |  31.2 KiB |  00m00s
[113/218] nettle-0:3.10-3.fc41.x86_64   100% |   4.5 MiB/s | 428.5 KiB |  00m00s
[114/218] graphite2-0:1.3.14-16.fc41.x8 100% | 980.8 KiB/s |  95.1 KiB |  00m00s
[115/218] libdatrie-0:0.2.13-10.fc41.x8 100% | 947.6 KiB/s |  32.2 KiB |  00m00s
[116/218] emacs-filesystem-1:30.0-3.fc4 100% |  59.5 KiB/s |   7.1 KiB |  00m00s
[117/218] alsa-lib-0:1.2.12-2.fc41.x86_ 100% |   4.1 MiB/s | 514.4 KiB |  00m00s
[118/218] javapackages-filesystem-0:6.2 100% | 133.1 KiB/s |  12.1 KiB |  00m00s
[119/218] copy-jdk-configs-0:4.1-6.fc41 100% | 201.0 KiB/s |  27.7 KiB |  00m00s
[120/218] lksctp-tools-0:1.0.19-9.fc41. 100% |   1.2 MiB/s |  98.0 KiB |  00m00s
[121/218] libXcomposite-0:0.4.6-4.fc41. 100% | 316.9 KiB/s |  24.4 KiB |  00m00s
[122/218] libXi-0:1.8.2-1.fc42.x86_64   100% |   1.2 MiB/s |  39.9 KiB |  00m00s
[123/218] tzdata-java-0:2024a-9.fc41.no 100% | 256.2 KiB/s |  47.4 KiB |  00m00s
[124/218] libXtst-0:1.2.5-1.fc41.x86_64 100% | 640.2 KiB/s |  20.5 KiB |  00m00s
[125/218] abattis-cantarell-vf-fonts-0: 100% |   1.6 MiB/s | 120.2 KiB |  00m00s
[126/218] xorg-x11-fonts-Type1-0:7.5-39 100% |   3.9 MiB/s | 507.0 KiB |  00m00s
[127/218] google-noto-sans-vf-fonts-0:2 100% |   5.3 MiB/s | 593.9 KiB |  00m00s
[128/218] lua-posix-0:36.2.1-7.fc41.x86 100% |   1.3 MiB/s | 141.4 KiB |  00m00s
[129/218] mkfontscale-0:1.2.3-1.fc41.x8 100% | 637.7 KiB/s |  31.9 KiB |  00m00s
[130/218] ttmkfdir-0:3.0.9-71.fc41.x86_ 100% | 519.3 KiB/s |  56.1 KiB |  00m00s
[131/218] google-noto-fonts-common-0:20 100% | 154.5 KiB/s |  17.8 KiB |  00m00s
[132/218] tbb-devel-0:2021.13.0-2.fc41. 100% |   2.6 MiB/s | 239.8 KiB |  00m00s
[133/218] libfontenc-0:1.1.8-2.fc41.x86 100% | 293.5 KiB/s |  32.6 KiB |  00m00s
[134/218] java-21-openjdk-headless-1:21 100% |  35.0 MiB/s |  47.8 MiB |  00m01s
[135/218] cmake-filesystem-0:3.28.3-7.f 100% | 205.0 KiB/s |  18.2 KiB |  00m00s
[136/218] tbb-bind-0:2021.13.0-2.fc41.x 100% | 220.4 KiB/s |  19.2 KiB |  00m00s
[137/218] cups-libs-1:2.4.10-6.fc42.x86 100% |   2.3 MiB/s | 259.8 KiB |  00m00s
[138/218] openblas-0:0.3.26-5.fc41.x86_ 100% | 348.7 KiB/s |  38.7 KiB |  00m00s
[139/218] hwloc-libs-0:2.11.1-3.fc42.x8 100% |  17.4 MiB/s |   2.1 MiB |  00m00s
[140/218] avahi-libs-0:0.8-30.fc42.x86_ 100% |   1.2 MiB/s |  66.6 KiB |  00m00s
[141/218] dbus-libs-1:1.14.10-4.fc41.x8 100% |   2.3 MiB/s | 155.1 KiB |  00m00s
[142/218] nss-0:3.104.0-1.fc42.x86_64   100% |   8.5 MiB/s | 704.1 KiB |  00m00s
[143/218] nspr-0:4.35.0-29.fc42.x86_64  100% |   2.4 MiB/s | 137.6 KiB |  00m00s
[144/218] nss-softokn-0:3.104.0-1.fc42. 100% |   8.8 MiB/s | 412.3 KiB |  00m00s
[145/218] nss-sysinit-0:3.104.0-1.fc42. 100% | 482.5 KiB/s |  19.3 KiB |  00m00s
[146/218] nss-softokn-freebl-0:3.104.0- 100% |   4.4 MiB/s | 301.9 KiB |  00m00s
[147/218] nss-util-0:3.104.0-1.fc42.x86 100% |   1.2 MiB/s |  86.1 KiB |  00m00s
[148/218] lua-0:5.4.6-6.fc41.x86_64     100% |   3.0 MiB/s | 190.9 KiB |  00m00s
[149/218] bzip2-devel-0:1.0.8-19.fc41.x 100% |   3.2 MiB/s | 213.7 KiB |  00m00s
[150/218] flexiblas-devel-0:3.4.4-3.fc4 100% |   1.3 MiB/s | 121.8 KiB |  00m00s
[151/218] flexiblas-openblas-openmp64-0 100% | 249.9 KiB/s |  17.2 KiB |  00m00s
[152/218] flexiblas-netlib64-0:3.4.4-3. 100% |  19.2 MiB/s |   3.1 MiB |  00m00s
[153/218] openblas-openmp64-0:0.3.26-5. 100% |   8.3 MiB/s |   4.9 MiB |  00m01s
[154/218] libmpc-0:1.3.1-6.fc41.x86_64  100% |   1.9 MiB/s |  71.1 KiB |  00m00s
[155/218] gcc-c++-0:14.2.1-3.fc42.x86_6 100% |  22.6 MiB/s |  14.2 MiB |  00m01s
[156/218] gcc-plugin-annobin-0:14.2.1-3 100% | 586.8 KiB/s |  55.2 KiB |  00m00s
[157/218] annobin-plugin-gcc-0:12.70-1. 100% |   7.0 MiB/s | 971.7 KiB |  00m00s
[158/218] annobin-docs-0:12.70-1.fc42.n 100% |   1.3 MiB/s |  92.0 KiB |  00m00s
[159/218] gcc-gfortran-0:14.2.1-3.fc42. 100% |  21.9 MiB/s |  13.4 MiB |  00m01s
[160/218] cpp-0:14.2.1-3.fc42.x86_64    100% |  15.7 MiB/s |  11.9 MiB |  00m01s
[161/218] libX11-devel-0:1.8.10-2.fc42. 100% |  10.2 MiB/s |   1.0 MiB |  00m00s
[162/218] libX11-xcb-0:1.8.10-2.fc42.x8 100% | 201.2 KiB/s |  11.9 KiB |  00m00s
[163/218] xorg-x11-proto-devel-0:2024.1 100% |   5.2 MiB/s | 300.3 KiB |  00m00s
[164/218] libdeflate-devel-0:1.21-2.fc4 100% | 329.1 KiB/s |  17.8 KiB |  00m00s
[165/218] libicu-devel-0:74.2-2.fc41.x8 100% |  15.1 MiB/s | 928.2 KiB |  00m00s
[166/218] libtirpc-devel-0:1.3.5-0.fc41 100% |   2.0 MiB/s | 125.6 KiB |  00m00s
[167/218] pcre2-devel-0:10.44-1.fc41.1. 100% |   4.7 MiB/s | 521.4 KiB |  00m00s
[168/218] pcre2-utf32-0:10.44-1.fc41.1. 100% |   3.7 MiB/s | 210.4 KiB |  00m00s
[169/218] pcre2-utf16-0:10.44-1.fc41.1. 100% |   1.4 MiB/s | 222.8 KiB |  00m00s
[170/218] tcl-devel-1:8.6.14-2.fc41.x86 100% |   3.3 MiB/s | 169.7 KiB |  00m00s
[171/218] tre-devel-0:0.8.0-45.20140228 100% | 185.1 KiB/s |  12.0 KiB |  00m00s
[172/218] tk-devel-1:8.6.14-2.fc41.x86_ 100% |   4.7 MiB/s | 540.6 KiB |  00m00s
[173/218] xz-devel-1:5.6.2-2.fc41.x86_6 100% |   1.1 MiB/s |  66.5 KiB |  00m00s
[174/218] zlib-ng-compat-devel-0:2.1.7- 100% | 645.6 KiB/s |  38.1 KiB |  00m00s
[175/218] libXft-devel-0:2.3.8-7.fc41.x 100% | 957.5 KiB/s |  49.8 KiB |  00m00s
[176/218] gcc-0:14.2.1-3.fc42.x86_64    100% |  18.2 MiB/s |  37.0 MiB |  00m02s
[177/218] fontconfig-devel-0:2.15.0-8.f 100% |   2.0 MiB/s | 164.8 KiB |  00m00s
[178/218] gettext-0:0.22.5-6.fc41.x86_6 100% |  11.2 MiB/s |   1.1 MiB |  00m00s
[179/218] gettext-runtime-0:0.22.5-6.fc 100% |   2.1 MiB/s | 121.8 KiB |  00m00s
[180/218] gettext-libs-0:0.22.5-6.fc41. 100% |   9.7 MiB/s | 666.4 KiB |  00m00s
[181/218] gettext-envsubst-0:0.22.5-6.f 100% |   1.1 MiB/s |  37.8 KiB |  00m00s
[182/218] libtextstyle-0:0.22.5-6.fc41. 100% |   1.8 MiB/s |  88.4 KiB |  00m00s
[183/218] libXrender-devel-0:0.9.11-7.f 100% | 546.3 KiB/s |  19.1 KiB |  00m00s
[184/218] freetype-devel-0:2.13.2-6.fc4 100% |  10.9 MiB/s | 950.3 KiB |  00m00s
[185/218] libquadmath-devel-0:14.2.1-3. 100% | 942.7 KiB/s |  44.3 KiB |  00m00s
[186/218] libxcb-devel-0:1.17.0-2.fc41. 100% |  18.7 MiB/s |   1.4 MiB |  00m00s
[187/218] glibc-headers-x86-0:2.40.9000 100% |   5.3 MiB/s | 627.7 KiB |  00m00s
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[189/218] libstdc++-devel-0:14.2.1-3.fc 100% |  14.4 MiB/s |   2.8 MiB |  00m00s
[190/218] libxcrypt-devel-0:4.4.36-7.fc 100% | 544.5 KiB/s |  28.9 KiB |  00m00s
[191/218] brotli-devel-0:1.1.0-5.fc41.x 100% | 369.6 KiB/s |  34.0 KiB |  00m00s
[192/218] brotli-0:1.1.0-5.fc41.x86_64  100% | 241.9 KiB/s |  20.1 KiB |  00m00s
[193/218] harfbuzz-devel-0:9.0.0-3.fc42 100% |   4.5 MiB/s | 446.8 KiB |  00m00s
[194/218] harfbuzz-cairo-0:9.0.0-3.fc42 100% | 345.4 KiB/s |  29.4 KiB |  00m00s
[195/218] libpng-devel-2:1.6.40-4.fc41. 100% |   5.2 MiB/s | 290.9 KiB |  00m00s
[196/218] harfbuzz-icu-0:9.0.0-3.fc42.x 100% | 184.5 KiB/s |  15.7 KiB |  00m00s
[197/218] libxml2-devel-0:2.12.8-2.fc41 100% |   8.7 MiB/s | 524.2 KiB |  00m00s
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[199/218] libXau-devel-0:1.0.11-7.fc41. 100% | 212.6 KiB/s |  13.8 KiB |  00m00s
[200/218] graphite2-devel-0:1.3.14-16.f 100% | 415.8 KiB/s |  20.8 KiB |  00m00s
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[202/218] libffi-devel-0:3.4.6-3.fc42.x 100% | 684.9 KiB/s |  28.8 KiB |  00m00s
[203/218] python3-packaging-0:24.1-2.fc 100% | 957.5 KiB/s | 125.4 KiB |  00m00s
[204/218] libmount-devel-0:2.40.2-8.fc4 100% | 637.1 KiB/s |  27.4 KiB |  00m00s
[205/218] kernel-headers-0:6.11.0-63.fc 100% |  12.8 MiB/s |   1.6 MiB |  00m00s
[206/218] libselinux-devel-0:3.7-6.fc42 100% |   2.7 MiB/s | 151.2 KiB |  00m00s
[207/218] libsepol-devel-0:3.7-3.fc42.x 100% |   1.4 MiB/s |  48.1 KiB |  00m00s
[208/218] python3-0:3.13.0~rc2-1.fc42.x 100% | 831.6 KiB/s |  27.4 KiB |  00m00s
[209/218] expat-0:2.6.3-1.fc42.x86_64   100% |   1.9 MiB/s | 114.1 KiB |  00m00s
[210/218] libb2-0:0.98.1-12.fc41.x86_64 100% | 524.0 KiB/s |  25.7 KiB |  00m00s
[211/218] mpdecimal-0:2.5.1-16.fc41.x86 100% |   2.0 MiB/s |  89.0 KiB |  00m00s
[212/218] python-pip-wheel-0:24.2-1.fc4 100% |   9.9 MiB/s |   1.2 MiB |  00m00s
[213/218] tzdata-0:2024a-9.fc41.noarch  100% |   7.0 MiB/s | 714.7 KiB |  00m00s
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[215/218] libXext-devel-0:1.3.6-2.fc41. 100% |   1.1 MiB/s |  85.4 KiB |  00m00s
[216/218] pixman-devel-0:0.43.4-2.fc41. 100% | 362.4 KiB/s |  17.4 KiB |  00m00s
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[218/218] python3-libs-0:3.13.0~rc2-1.f 100% |  25.8 MiB/s |   9.1 MiB |  00m00s
--------------------------------------------------------------------------------
[218/218] Total                         100% |  37.2 MiB/s | 330.1 MiB |  00m09s
Running transaction
[  1/220] Verify package files          100% | 190.0   B/s | 218.0   B |  00m01s
>>> Running pre-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch
>>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch
>>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.f
>>> Stop pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc41
[  2/220] Prepare transaction           100% | 464.0   B/s | 218.0   B |  00m00s
[  3/220] Installing xorg-x11-proto-dev 100% | 118.8 MiB/s |   1.8 MiB |  00m00s
[  4/220] Installing nspr-0:4.35.0-29.f 100% | 104.8 MiB/s | 322.1 KiB |  00m00s
[  5/220] Installing libgfortran-0:14.2 100% | 304.8 MiB/s |   3.0 MiB |  00m00s
[  6/220] Installing tbb-0:2021.13.0-2. 100% | 108.3 MiB/s | 443.8 KiB |  00m00s
[  7/220] Installing nss-util-0:3.104.0 100% | 201.1 MiB/s | 206.0 KiB |  00m00s
[  8/220] Installing libmpc-0:1.3.1-6.f 100% |  81.1 MiB/s | 166.2 KiB |  00m00s
[  9/220] Installing cmake-filesystem-0 100% |   2.3 MiB/s |   7.1 KiB |  00m00s
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[ 13/220] Installing fonts-filesystem-1 100% | 769.5 KiB/s | 788.0   B |  00m00s
[ 14/220] Installing tcl-1:8.6.14-2.fc4 100% | 176.1 MiB/s |   4.2 MiB |  00m00s
[ 15/220] Installing libicu-0:74.2-2.fc 100% | 293.7 MiB/s |  35.0 MiB |  00m00s
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[ 17/220] Installing tcl-devel-1:8.6.14 100% | 194.9 MiB/s | 798.4 KiB |  00m00s
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[ 19/220] Installing libtextstyle-0:0.2 100% |  95.9 MiB/s | 196.5 KiB |  00m00s
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[ 21/220] Installing xz-devel-1:5.6.2-2 100% |  84.4 MiB/s | 259.4 KiB |  00m00s
[ 22/220] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB |  00m00s
[ 23/220] Installing openblas-0:0.3.26- 100% |  95.5 MiB/s |  97.8 KiB |  00m00s
[ 24/220] Installing graphite2-0:1.3.14 100% |  94.8 MiB/s | 194.1 KiB |  00m00s
[ 25/220] Installing libXau-0:1.0.11-7. 100% |  66.8 MiB/s |  68.4 KiB |  00m00s
[ 26/220] Installing libxcb-0:1.17.0-2. 100% | 124.1 MiB/s |   1.1 MiB |  00m00s
[ 27/220] Installing libICE-0:1.1.1-4.f 100% |  89.2 MiB/s | 182.6 KiB |  00m00s
[ 28/220] Installing pixman-0:0.43.4-2. 100% | 234.1 MiB/s | 719.2 KiB |  00m00s
[ 29/220] Installing make-1:4.4.1-8.fc4 100% | 180.0 MiB/s |   1.8 MiB |  00m00s
[ 30/220] Installing libjpeg-turbo-0:3. 100% | 253.5 MiB/s | 778.7 KiB |  00m00s
[ 31/220] Installing libdeflate-0:1.21- 100% | 115.7 MiB/s | 118.4 KiB |  00m00s
[ 32/220] Installing libRmath-0:4.4.1-5 100% | 121.0 MiB/s | 247.8 KiB |  00m00s
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[ 34/220] Installing libdeflate-devel-0 100% |  26.4 MiB/s |  27.1 KiB |  00m00s
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[ 36/220] Installing libSM-0:1.2.4-4.fc 100% |  96.3 MiB/s |  98.7 KiB |  00m00s
[ 37/220] Installing libXau-devel-0:1.0 100% |   1.3 MiB/s |   8.2 KiB |  00m00s
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[ 39/220] Installing graphite2-devel-0: 100% |  49.4 MiB/s |  50.6 KiB |  00m00s
[ 40/220] Installing openblas-openmp-0: 100% | 447.4 MiB/s |  39.4 MiB |  00m00s
[ 41/220] Installing openblas-openmp64- 100% | 449.2 MiB/s |  39.5 MiB |  00m00s
[ 42/220] Installing flexiblas-netlib64 100% | 316.9 MiB/s |  10.8 MiB |  00m00s
[ 43/220] Installing flexiblas-openblas 100% |  43.1 MiB/s |  44.2 KiB |  00m00s
[ 44/220] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 45/220] Installing flexiblas-openblas 100% |  43.1 MiB/s |  44.1 KiB |  00m00s
[ 46/220] Installing flexiblas-netlib-0 100% | 304.7 MiB/s |  10.7 MiB |  00m00s
[ 47/220] Installing flexiblas-devel-0: 100% | 396.9 MiB/s |   4.8 MiB |  00m00s
[ 48/220] Installing libxml2-devel-0:2. 100% | 201.0 MiB/s |   3.4 MiB |  00m00s
[ 49/220] Installing abattis-cantarell- 100% |  94.9 MiB/s | 194.4 KiB |  00m00s
[ 50/220] Installing cpp-0:14.2.1-3.fc4 100% | 284.6 MiB/s |  35.0 MiB |  00m00s
[ 51/220] Installing nss-softokn-freebl 100% | 153.5 MiB/s | 785.8 KiB |  00m00s
[ 52/220] Installing nss-softokn-0:3.10 100% | 235.9 MiB/s |   1.9 MiB |  00m00s
[ 53/220] Installing nss-sysinit-0:3.10 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[ 54/220] Installing nss-0:3.104.0-1.fc 100% |  94.1 MiB/s |   1.9 MiB |  00m00s
>>> Running post-install scriptlet: nss-0:3.104.0-1.fc42.x86_64
>>> Stop post-install scriptlet: nss-0:3.104.0-1.fc42.x86_64
[ 55/220] Installing libblkid-devel-0:2 100% |  44.9 MiB/s |  46.0 KiB |  00m00s
[ 56/220] Installing sysprof-capture-de 100% |  44.9 MiB/s | 276.1 KiB |  00m00s
[ 57/220] Installing tzdata-0:2024a-9.f 100% |  26.6 MiB/s |   1.9 MiB |  00m00s
[ 58/220] Installing python-pip-wheel-0 100% | 413.9 MiB/s |   1.2 MiB |  00m00s
[ 59/220] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB |  00m00s
[ 60/220] Installing libb2-0:0.98.1-12. 100% |  42.3 MiB/s |  43.3 KiB |  00m00s
[ 61/220] Installing expat-0:2.6.3-1.fc 100% |  35.8 MiB/s | 293.6 KiB |  00m00s
[ 62/220] Installing python3-libs-0:3.1 100% | 200.6 MiB/s |  40.7 MiB |  00m00s
[ 63/220] Installing python3-0:3.13.0~r 100% |  32.8 MiB/s |  33.6 KiB |  00m00s
[ 64/220] Installing python3-packaging- 100% |  84.6 MiB/s | 433.2 KiB |  00m00s
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[ 73/220] Installing gcc-0:14.2.1-3.fc4 100% | 302.6 MiB/s | 104.4 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
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[103/220] Installing javapackages-files 100% |   2.6 MiB/s |   5.3 KiB |  00m00s
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[115/220] Installing ttmkfdir-0:3.0.9-7 100% |  60.4 MiB/s | 123.8 KiB |  00m00s
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[119/220] Installing cups-libs-1:2.4.10 100% | 122.0 MiB/s | 624.4 KiB |  00m00s
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>>> Running post-install scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc41
>>> Stop post-install scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc41.x8
>>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
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[122/220] Installing fontconfig-0:2.15. 100% | 779.2 KiB/s | 811.1 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
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>>> Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-39.fc41.noarch
>>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-39.fc41.noarch
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[125/220] Installing tre-0:0.8.0-45.201 100% |  37.5 MiB/s |  76.7 KiB |  00m00s
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[129/220] Installing liblerc-0:4.0.0-7. 100% | 119.0 MiB/s | 609.0 KiB |  00m00s
[130/220] Installing jbigkit-libs-0:2.1 100% |  58.4 MiB/s | 119.6 KiB |  00m00s
[131/220] Installing libtiff-0:4.6.0-6. 100% |  99.0 MiB/s | 608.2 KiB |  00m00s
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[134/220] Installing libXext-0:1.3.6-2. 100% |  44.6 MiB/s |  91.3 KiB |  00m00s
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[138/220] Installing libXft-0:2.3.8-7.f 100% |  11.6 MiB/s | 166.0 KiB |  00m00s
>>> Running pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
>>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
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[143/220] Installing libXmu-0:1.2.1-2.f 100% |  94.5 MiB/s | 193.5 KiB |  00m00s
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[145/220] Installing pango-0:1.54.0-2.f 100% | 139.8 MiB/s |   1.0 MiB |  00m00s
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[148/220] Installing fontconfig-devel-0 100% |  16.5 MiB/s | 151.9 KiB |  00m00s
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>>> Running post-install scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64
>>> Stop post-install scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64
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>>> Running post-install scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x8
>>> Stop post-install scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x86_6
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[176/220] Installing R-CRAN-Rcpp-0:1.0. 100% | 137.2 MiB/s |   8.5 MiB |  00m00s
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[182/220] Installing R-CRAN-crayon-0:1. 100% |  41.0 MiB/s | 251.8 KiB |  00m00s
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[194/220] Installing R-java-0:4.4.1-5.f 100% |   0.0   B/s | 124.0   B |  00m00s
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[196/220] Installing R-CRAN-colorspace- 100% | 146.8 MiB/s |   4.1 MiB |  00m00s
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[199/220] Installing R-CRAN-utf8-0:1.2. 100% |  93.7 MiB/s | 479.5 KiB |  00m00s
[200/220] Installing R-CRAN-pillar-0:1. 100% | 130.6 MiB/s |   1.4 MiB |  00m00s
[201/220] Installing R-CRAN-tibble-0:3. 100% | 121.7 MiB/s |   1.7 MiB |  00m00s
[202/220] Installing R-CRAN-ggplot2-0:3 100% | 139.1 MiB/s |   7.2 MiB |  00m00s
[203/220] Installing R-devel-0:4.4.1-5. 100% |   0.0   B/s | 124.0   B |  00m00s
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[205/220] Installing R-CRAN-rex-0:1.2.1 100% |  37.2 MiB/s | 266.5 KiB |  00m00s
[206/220] Installing R-CRAN-qs-0:0.26.3 100% | 186.9 MiB/s |   3.0 MiB |  00m00s
[207/220] Installing R-CRAN-lotri-0:1.0 100% |  86.4 MiB/s | 530.6 KiB |  00m00s
[208/220] Installing R-CRAN-dparser-0:1 100% | 107.7 MiB/s | 881.9 KiB |  00m00s
[209/220] Installing R-CRAN-RcppArmadil 100% | 133.7 MiB/s |   6.1 MiB |  00m00s
[210/220] Installing R-CRAN-RcppEigen-0 100% | 147.4 MiB/s |   9.1 MiB |  00m00s
[211/220] Installing R-CRAN-rxode2ll-0: 100% |  72.5 MiB/s | 445.7 KiB |  00m00s
[212/220] Installing R-CRAN-sitmo-0:2.0 100% |  72.7 MiB/s | 893.2 KiB |  00m00s
[213/220] Installing R-CRAN-StanHeaders 100% |  74.9 MiB/s |  10.1 MiB |  00m00s
[214/220] Installing R-CRAN-BH-0:1.84.0 100% | 134.0 MiB/s | 123.5 MiB |  00m01s
[215/220] Installing R-CRAN-PreciseSums 100% |  17.0 MiB/s |  86.9 KiB |  00m00s
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[217/220] Installing R-CRAN-inline-0:0. 100% |  43.5 MiB/s | 222.9 KiB |  00m00s
[218/220] Installing R-CRAN-sys-0:3.4.2 100% |  17.2 MiB/s |  88.0 KiB |  00m00s
[219/220] Installing annobin-plugin-gcc 100% |  37.1 MiB/s | 987.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
[220/220] Installing gcc-plugin-annobin 100% | 105.3 KiB/s |  62.7 KiB |  00m01s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch
>>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch
>>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch
>>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.
>>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc4
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_
>>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64
>>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc4
>>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x
>>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64
>>> Running trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64
>>> Running trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64
>>> Stop trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
Warning: skipped PGP checks for 54 package(s).
Finish: build setup for R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
Start: rpmbuild R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
Building target platforms: x86_64
Building for target x86_64
warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.p924SZ
+ umask 022
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ test -d /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ /usr/bin/rm -rf /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xbsxq2
+ umask 022
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ rm -rf rxode2
+ /usr/bin/mkdir -p rxode2
+ cd rxode2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rxode2_3.0.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';'
+ '[' -d rxode2/src ']'
+ find rxode2/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';'
+ '[' -d rxode2/src ']'
+ find rxode2/src/Makevars.in -type f -exec sed -i s@-g0@@g '{}' ';'
+ find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.JkCKSb
+ umask 022
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd rxode2
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9nlViE
+ umask 022
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ '[' /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ mkdir /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd rxode2
+ mkdir -p /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT/usr/local/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT/usr/local/lib/R/library rxode2
* installing *source* package ‘rxode2’ ...
** package ‘rxode2’ successfully unpacked and MD5 sums checked
** using staged installation

R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> ## This is only for rxode2
> for (f in c("inst/include/rxode2_RcppExports.h", "src/RcppExports.cpp")) {
+   l <- readLines(f)
+   w <- which(regexpr("^[#]include <RcppArmadillo.h>", l) != -1)
+   if (length(w) > 0) {
+     l <- l[-w]
+   }
+   w <- which(regexpr("^[#]define R_STRICT_HEADERS", l) != -1)
+   if (length(w) > 0) {
+     l <- l[-w]
+   }
+   l <- c("#define R_STRICT_HEADERS",
+          "#include <RcppArmadillo.h>",
+          l)
+   file.out <- file(f, "wb")
+   writeLines(l, file.out)
+   close(file.out)
+ }
> 
> l <- readLines("R/RcppExports.R")
> w <- which(regexpr("# Register entry points", l, fixed=TRUE) != -1)
> if (length(w) >= 1) {
+   w <- w[1]
+   l <- l[seq(1, w-1)]
+   RcppExports.R <- file("R/RcppExports.R", "wb")
+   writeLines(l, RcppExports.R)
+   close(RcppExports.R)
+ }
> 
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> .in <- gsub("@ARMA@", file.path(find.package("RcppArmadillo"),"include"), .in)
> .in <- gsub("@BH@", file.path(find.package("BH"),"include"), .in)
> .in <- gsub("@RCPP@", file.path(find.package("Rcpp"),"include"), .in)
> .in <- gsub("@EG@", file.path(find.package("RcppEigen"),"include"), .in)
> 
> .in <- gsub("@SL@", paste(capture.output(StanHeaders:::LdFlags()), capture.output(RcppParallel:::RcppParallelLibs())), #nolint
+             .in)
> 
> 
> .badStan <- ""
> .in <- gsub("@SH@", gsub("-I", "-@ISYSTEM@",
+                          paste(capture.output(StanHeaders:::CxxFlags()), # nolint
+                                capture.output(RcppParallel:::CxxFlags()), # nolint
+                                paste0("-@ISYSTEM@'", system.file('include', 'src', package = 'StanHeaders', mustWork = TRUE), "'"),
+                                .badStan)),
+             .in)
> 
> 
> 
> 
> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) {
+   .in <- gsub("@CXX14STD@", "-std=c++1y", .in)
+   file.out <- file("src/Makevars.win", "wb")
+   writeLines(gsub("@ISYSTEM@", "I", .in),
+              file.out)
+   close(file.out)
+ } else {
+   .in <- gsub("@CXX14STD@", "-std=gnu++14", .in)
+   file.out <- file("src/Makevars", "wb")
+   writeLines(gsub("@ISYSTEM@", "isystem", .in),
+              file.out)
+   close(file.out)
+ }
> 
> if (file.exists("man/reexports.Rd")) {
+   l <- readLines("man/reexports.Rd")
+   if (!any(regexpr("[\\]value", l) != -1)) {
+     l <- c(l, "\\value{ Inherited from parent routine }")
+     file.out <- file("man/reexports.Rd", "wb")
+     writeLines(l, file.out)
+     close(file.out)
+   }
+ }
> 
> 
> unlink("R/rxode2_md5.R")
> 
> cpp <- list.files("src", pattern = ".(c|h|cpp|f)$")
> include <- list.files("inst/include")
> #Rfiles <- list.files("R/", pattern = ".R")
> 
> cmd <- file.path(R.home("bin"), "R")
> args <- c("CMD", "config")
> 
> md5 <- digest::digest(c(lapply(c(paste0("src/", cpp),
+                                  paste0("inst/include/", include)#,
+                                  #paste0("R/", Rfiles)
+                                  ), digest::digest, file = TRUE),
+                         ## vapply(c("BLAS_LIBS", "CC",  "CFLAGS", "CPICFLAGS",
+                         ##          "CXX", "CXXFLAGS", "CXXPICFLAGS",
+                         ##          "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS",
+                         ##          "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS",
+                         ##          "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS",
+                         ##          "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS",
+                         ##          "FC", "FFLAGS", "FCFLAGS",  "FPICFLAGS"),
+                         ##        function(cfg) {
+                         ##          rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout)
+                         ##        }, character(1)
+                         ##       ),
+                         ""
+                         ))
> unlink("R/rxode2_md5.R")
> md5file <- file("R/rxode2_md5.R", "wb")
> writeLines(sprintf("rxode2.md5 <- \"%s\"\n", md5), md5file)
> close(md5file)
> 
> l <- readLines("DESCRIPTION")
> w <- which(regexpr("Version[:] *(.*)$", l) != -1)
> v <- gsub("Version[:] *(.*)$", "\\1", l[w])
> 
> unlink("inst/include/rxode2parseVer.h")
> ode.h <- file("inst/include/rxode2parseVer.h", "wb")
> writeLines(c(sprintf("#define __VER_md5__ \"%s\"", md5),
+              "#define __VER_repo__ \"https://github.com/nlmixr2/rxode2\"",
+              sprintf("#define __VER_ver__ \"%s\"", v)),
+            ode.h)
> close(ode.h)
> 
> unlink("src/sbuf.c")
> l <- readLines("inst/include/sbuf.c")
> sbuf.c <- file("src/sbuf.c", "wb")
> writeLines(l, sbuf.c)
> close(sbuf.c)
> 
> 
> unlink("src/codegen2.h")
> l <- readLines("inst/include/rxode2_model_shared.c")
> 
> l <- l[l != ""]
> l <- gsub(" *= *NULL;", "=NULL;", l)
> 
> def <- l
> w <- which(regexpr("double _prod", def) != -1) - 1
> def <- def[1:w]
> def <- gsub("=NULL", "", def)
> def <- gsub("[^ ]* *[*]?([^;]*);", "\\1", def)
> 
> def <- unique(c(def, c("_sum", "_udf", "_sign", "_prod", "_max", "_min", "_transit4P", "_transit3P", "_assignFuns0", "_assignFuns", "_getRxSolve_", "_solveData", "_rxord", "__assignFuns2")))
> 
> w0 <- which(grepl("double +_prod", l))[1]
> r <- 1:(w0 - 1)
> l0 <- l[r]
> l <- l[-r]
> 
> 
> w1 <- which(regexpr("dynamic start", l) != -1)
> l1 <- l[1:w1]
> 
> 
> 
> w2 <- which(regexpr("dynamic stop", l) != -1)
> l2 <- l[seq(w2, length(l))]
> 
> w3 <- which(regexpr("assign start", l2) != -1)
> 
> l3 <- l2[seq(w3, length(l2))]
> l2 <- l2[1:w3]
> 
> w4 <- which(regexpr("assign stop", l3) != -1)
> l3 <- l3[seq(w4, length(l3))]
> 
> dfP <- l[seq(w1+1, w2-1)]
> 
> dfP <- dfP[regexpr("^ *$", dfP)==-1]
> df <- setNames(do.call("rbind",lapply(seq_along(dfP),
+                                       function(i) {
+                                         .r <- sub("^ *", "", dfP[[i]])
+                                         .r <- sub("^([^ ]*) *= *[(]", "\\1,", .r)
+                                         .r <- sub("^([^ ]*) *[)] *R_GetCCallable *[(] *\"", "\\1,", .r, perl=TRUE)
+                                         .r <- sub("^([^ ]*) *\" *, *\"", "\\1,", .r, perl=TRUE)
+                                         .r <- sub("^([^ ]*)\" *[)] *; *", "\\1",.r, perl=TRUE)
+                                         data.frame(t(strsplit(.r, ",")[[1]]),stringsAsFactors = FALSE)
+                                       })), c("fun", "type", "package", "packageFun"))
> 
> df$rxFun <- df$fun
> df$argMax <- df$argMin <- NA_integer_
> df$threadSafe <- 1L
> df <- df[,c("rxFun", "fun", "type", "package", "packageFun", "argMin", "argMax", "threadSafe")]
> df$rxFun <- gsub("_llik", "llik", df$rxFun)
> 
> def <- def[!(def %in% df$rxFun)]
> def <- def[!(def %in% df$fun)]
> 
> .parseEnv <- new.env(parent=emptyenv())
> source("R/parseFuns.R")
> 
> df$argMin <- vapply(df$rxFun, function(f) {
+   .n <- .parseEnv$.parseNum[f]
+   if (is.na(.n)) return(NA_integer_)
+   .n <-setNames(.n, NULL)
+   as.integer(.n)
+ }, integer(1), USE.NAMES=TRUE)
> 
> df$argMax <- df$argMin
> 
> dfStr <- deparse(df)
> dfStr[1] <- paste(".parseEnv$.rxode2parseDf <- ", dfStr[1])
> 
> dfIni.R <- file("R/dfIni.R", "wb")
> writeLines(dfStr,
+            dfIni.R)
> close(dfIni.R)
> 
> ## deparse1 came from R 4.0, use deparse2
> deparse2 <- function(expr, collapse = " ", width.cutoff = 500L, ...) {
+   paste(deparse(expr, width.cutoff, ...), collapse = collapse)
+ }
> 
> final <- c("#include <time.h>",
+            "#include <stdlib.h>",
+            "unsigned long int __timeId=0;",
+            "void writeHeader(const char *md5, const char *extra) {",
+            paste0("sAppend(&sbOut, \"#define ", def, " _rx%s%s%ld\\n\", extra, md5, __timeId++);"),
+            "}",
+            "void writeBody0(void) {",
+            paste0("sAppendN(&sbOut, ", vapply(paste0(l0, "\n"), deparse2, character(1)), ", ", nchar(l0) + 1, ");"),
+            "}",
+            "void writeBody1(void) {",
+            paste0("sAppendN(&sbOut, ", vapply(paste0(l1, "\n"), deparse2, character(1)), ", ", nchar(l1) + 1, ");"),
+            "}",
+            "void writeBody2(void) {",
+            paste0("sAppendN(&sbOut, ", vapply(paste0(l2, "\n"), deparse2, character(1)), ", ", nchar(l2) + 1, ");"),
+            "}",
+            "void writeBody3(void) {",
+            paste0("sAppendN(&sbOut, ", vapply(paste0(l3, "\n"), deparse2, character(1)), ", ", nchar(l3) + 1, ");"),
+            "}",
+            "void writeFooter(void) {",
+            paste0("sAppendN(&sbOut, \"#undef ", def, "\\n\", ", nchar(def) + 8, ");"),
+            "}"
+            )
> 
> codegen2.h <- file("src/codegen2.h", "wb")
> writeLines(final,
+            codegen2.h)
> close(codegen2.h)
> 
> proc.time()
   user  system elapsed 
  0.222   0.088   0.290 
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/usr/local/lib/R/library/BH/include
RCPP=/usr/local/lib/R/library/Rcpp/include
EG=/usr/local/lib/R/library/RcppEigen/include
SH=-isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src' 
CXX_STD = CXX17

################################################################################
## Package library flags.
PKG_LIBS    = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/usr/local/lib/R/library/RcppParallel/lib/' -Wl,-rpath,'/usr/local/lib/R/library/RcppParallel/lib/' -ltbb -ltbbmalloc   -L/usr/lib64 -Wl,-rpath,/usr/lib64 -ltbb -ltbbmalloc

# Release options
PKG_CFLAGS  =  -D_isrxode2_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)"
--------[end src/Makevars]--------
--------[begin R/RxODE_md5.R]--------
rxode2.md5 <- "92e9ff671b8c1ed5389b15f0a6250431"

--------[end R/RxODE_md5.R]--------
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++17
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c RcppExports.cpp -o RcppExports.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c approx.c -o approx.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c boost.cpp -o boost.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c box.c -o box.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c call_dvode.c -o call_dvode.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c cbindThetaOmega.cpp -o cbindThetaOmega.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c cfode.c -o cfode.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c cfode_static.c -o cfode_static.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c checkmate.cpp -o checkmate.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c checkmate_stub.c -o checkmate_stub.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c codegen.c -o codegen.o
codegen.c: In function ‘codegen’:
codegen.c:344:19: warning: unused variable ‘assignOne’ [-Wunused-variable]
  344 |               int assignOne = 0;
      |                   ^~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c common.c -o common.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c corfailure.c -o corfailure.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c correction.c -o correction.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c cvPost.cpp -o cvPost.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c daxpy.c -o daxpy.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c ddot.c -o ddot.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c dgefa.c -o dgefa.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c dgesl.c -o dgesl.o
gfortran  -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c dgpadm.f -o dgpadm.o
gfortran  -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c dlsoda.f -o dlsoda.o
dlsoda.f: In function ‘dlsoda_’:
dlsoda.f:2536:72: warning: ‘ml’ may be used uninitialized [-Wmaybe-uninitialized]
 2536 |       IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
      |                                                                        ^
dlsoda.f:2407:32: note: ‘ml’ was declared here
 2407 |      1   LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
      |                                ^
dlsoda.f:2536:72: warning: ‘mu’ may be used uninitialized [-Wmaybe-uninitialized]
 2536 |       IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
      |                                                                        ^
dlsoda.f:2407:42: note: ‘mu’ was declared here
 2407 |      1   LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
      |                                          ^
dlsoda.f:2615:29: warning: ‘h0’ may be used uninitialized [-Wmaybe-uninitialized]
 2615 |       IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0)
      |                             ^
dlsoda.f:2412:48: note: ‘h0’ was declared here
 2412 |       DOUBLE PRECISION ATOLI, AYI, BIG, EWTI, H0, HMAX, HMX, RH, RTOLI,
      |                                                ^
dlsoda.f:2851:72: warning: ‘tcrit’ may be used uninitialized [-Wmaybe-uninitialized]
 2851 |       IHIT = ABS(TN - TCRIT) .LE. 100.0D0*UROUND*HMX
      |                                                                        ^
dlsoda.f:2413:14: note: ‘tcrit’ was declared here
 2413 |      1   TCRIT, TDIST, TNEXT, TOL, TOLSF, TP, SIZE, SUM, W0
      |              ^
dlsoda.f:2874:10: warning: ‘ihit’ may be used uninitialized [-Wmaybe-uninitialized]
 2874 |       IF (IHIT) T = TCRIT
      |          ^
dlsoda.f:2415:18: note: ‘ihit’ was declared here
 2415 |       LOGICAL IHIT
      |                  ^
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c dop853.c -o dop853.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c dscal.c -o dscal.o
gfortran  -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c dsphiv.f -o dsphiv.o
dsphiv.f: In function ‘dsphiv_’:
dsphiv.f:270:72: warning: ‘hj1j’ may be used uninitialized [-Wmaybe-uninitialized]
  270 |       wsp(iphih+mbrkdwn+1) = hj1j*wsp(iphih+2*mx+mbrkdwn-1)
      |                                                                        ^
dsphiv.f:125:35: note: ‘hj1j’ was declared here
  125 |      .                 avnorm, hj1j, hjj, SQR1
      |                                   ^
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c et.cpp -o et.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c etTran.cpp -o etTran.o
etTran.cpp: In function ‘Rcpp::List etTrans(Rcpp::List, const Rcpp::RObject&, bool, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<10, Rcpp::PreserveStorage> >, Rcpp::CharacterVector, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<19> >)’:
etTran.cpp:784:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  784 |     if (hasCmt || covColi >= 0 && as<std::string>(lName[covColi]) != "cmt"){
      |                   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2521:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2521 |                        id.size() > (idxOut = idxOutput[iCur]) &&
      |                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2524:40: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2524 |                        idxInput.size() > idxOut &&
      |                        ~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2532:41: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2532 |                        idxOutput.size() < iCur+1 &&
      |                        ~~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2533:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2533 |                        id.size() > (idxOut = idxOutput[iCur+1]) &&
      |                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2536:40: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2536 |                        idxInput.size() > idxOut &&
      |                        ~~~~~~~~~~~~~~~~^~~~~~~~
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c expandGrid.cpp -o expandGrid.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c expm.cpp -o expm.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c fast_factor.cpp -o fast_factor.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c fnorm.c -o fnorm.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c forder.cpp -o forder.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c genModelVars.c -o genModelVars.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c getOption.c -o getOption.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c handle_evid.c -o handle_evid.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c idamax.c -o idamax.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c init.c -o init.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c intdy.c -o intdy.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c isEt.c -o isEt.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c lincmt.c -o lincmt.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c lincmtB.cpp -o lincmtB.o
In file included from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor.hpp:13,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev/fun.hpp:201,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev.hpp:10,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math.hpp:19,
                 from lincmtB.cpp:64:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector<int>&, const int&, const int&, const int&)’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   73 |   for (std::size_t i = 0; i < p - 1; i++) {
      |                           ~~^~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   79 |     } while (k < x);
      |              ~~^~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  102 |   for (std::size_t i = 1; i != choose_dimk + 1; i++) {
      |                           ~~^~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  105 |     for (std::size_t j = 0; j != k; j++) {
      |                             ~~^~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector<bool>&, const int&, const double&, const std::vector<int>&, std::vector<double, std::allocator<double> >&)’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  126 |     for (std::size_t j = 0; j != k; j++) {
      |                             ~~^~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  132 |   while ((first_zero < index.size()) && index[first_zero]) {
      |           ~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  135 |   if (first_zero == index.size()) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  143 |     for (std::size_t i = 0; i != first_zero + 1; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  168 |   for (std::size_t i = 1; i != choose_dimk + 1; i++) {
      |                           ~~^~~~~~~~~~~~~~~~~~
In file included from /usr/local/lib/R/library/BH/include/boost/random/ranlux.hpp:20,
                 from /usr/local/lib/R/library/BH/include/boost/random.hpp:45,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/prob/hmm_hidden_state_prob.hpp:8,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/prob.hpp:137,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim.hpp:16,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev.hpp:14:
/usr/local/lib/R/library/BH/include/boost/random/subtract_with_carry.hpp: In member function ‘boost::random::subtract_with_carry_engine<IntType, w, s, r>::result_type boost::random::subtract_with_carry_engine<IntType, w, s, r>::operator()()’:
/usr/local/lib/R/library/BH/include/boost/random/subtract_with_carry.hpp:208: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
  208 |         if(k >= long_lag)
/usr/local/lib/R/library/BH/include/boost/random/subtract_with_carry.hpp:208: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory
In file included from lincmtB.cpp:108:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223: warning: unused variable ‘curEvid’ [-Wunused-variable]
  223 |     int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
In file included from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err.hpp:4,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev/core/profiling.hpp:9,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev/core.hpp:53,
                 from /usr/local/lib/R/library/StanHeaders/include/stan/math/rev.hpp:8:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
   29 |   elementwise_check([](double x) { return std::isfinite(x); }, function, name,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   30 |                     y, "finite");
      |                     ~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   35 |   check_finite("hypergeometric_pFq", "a", a_ref);
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
  125 |   return hypergeometric_pFq(to_vector(a), to_vector(b), z);
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
  148 |   return hypergeometric_3F2(std::vector<Ta>(a), std::vector<Tb>(b), z);
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37:   required from here
   77 |             + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w))
      |                   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
   28 |   elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   29 |                     "not nan");
      |                     ~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   39 |   check_not_nan("hypergeometric_pFq", "a", a_ref);
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
  125 |   return hypergeometric_pFq(to_vector(a), to_vector(b), z);
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
  148 |   return hypergeometric_3F2(std::vector<Ta>(a), std::vector<Tb>(b), z);
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37:   required from here
   77 |             + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w))
      |                   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
   29 |   elementwise_check([](double x) { return std::isfinite(x); }, function, name,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   30 |                     y, "finite");
      |                     ~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   35 |   check_finite("hypergeometric_pFq", "a", a_ref);
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
  189 |     return hypergeometric_pFq(a_args, b_args, z);
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
  190 |       auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
      |                     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
  306 |   return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  307 |                                                          precision, max_steps);
      |                                                          ~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
   37 |         = grad_2F1<true>(a + b, 1.0, a + 1, z);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
   29 |   elementwise_check([](double x) { return std::isfinite(x); }, function, name,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   30 |                     y, "finite");
      |                     ~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   36 |   check_finite("hypergeometric_pFq", "b", b_ref);
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
  189 |     return hypergeometric_pFq(a_args, b_args, z);
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
  190 |       auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
      |                     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
  306 |   return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  307 |                                                          precision, max_steps);
      |                                                          ~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
   37 |         = grad_2F1<true>(a + b, 1.0, a + 1, z);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
   28 |   elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   29 |                     "not nan");
      |                     ~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   39 |   check_not_nan("hypergeometric_pFq", "a", a_ref);
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
  189 |     return hypergeometric_pFq(a_args, b_args, z);
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
  190 |       auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
      |                     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
  306 |   return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  307 |                                                          precision, max_steps);
      |                                                          ~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
   37 |         = grad_2F1<true>(a + b, 1.0, a + 1, z);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
   28 |   elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   29 |                     "not nan");
      |                     ~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
   40 |   check_not_nan("hypergeometric_pFq", "b", b_ref);
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
  189 |     return hypergeometric_pFq(a_args, b_args, z);
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
  190 |       auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
      |                     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
  306 |   return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  307 |                                                          precision, max_steps);
      |                                                          ~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
   37 |         = grad_2F1<true>(a + b, 1.0, a + 1, z);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
In function ‘handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
    inlined from ‘getTime__(int, rx_solving_options_ind*, int) [clone .constprop.0]’ at ../inst/include/rxode2parseGetTime.h:381:0:
../inst/include/rxode2parseGetTime.h:314: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
  314 |     if (infBidx == -1) return 0.0;
../inst/include/rxode2parseGetTime.h: In function ‘getTime__(int, rx_solving_options_ind*, int) [clone .constprop.0]’:
../inst/include/rxode2parseGetTime.h:312: note: ‘infBidx’ was declared here
  312 |     int infBidx;
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c lsoda.c -o lsoda.o
gfortran  -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c matexp.f -o matexp.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c matexp_HM98.c -o matexp_HM98.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c methodswitch.c -o methodswitch.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c nearPD.cpp -o nearPD.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c omegaChol.c -o omegaChol.o
gfortran  -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c opkda2.f -o opkda2.o
opkda2.f: In function ‘ixsav_’:
opkda2.f:650:28: warning: ‘__result_ixsav’ may be used uninitialized [-Wmaybe-uninitialized]
  650 |       INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET)
      |                            ^
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c orderswitch.c -o orderswitch.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c par_solve.cpp -o par_solve.o
In file included from par_solve.cpp:15:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable]
  223 |     int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
      |         ^~~~~~~
par_solve.cpp: In function ‘void handleSS(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)’:
par_solve.cpp:1317:39: warning: variable ‘oldI’ set but not used [-Wunused-but-set-variable]
 1317 |       ei=0, wh, cmt, wh100, whI, wh0, oldI,
      |                                       ^~~~
../inst/include/rxode2parseGetTime.h: In function ‘handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*) [clone .constprop.0]’:
../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
  314 |     if (infBidx == -1) return 0.0;
      |     ^~
../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here
  312 |     int infBidx;
      |         ^~~~~~~
par_solve.cpp: In function ‘solveWith1Pt(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, void (*)(int, double*), void*) [clone .isra.0]’:
par_solve.cpp:708:5: warning: ‘idid’ may be used uninitialized [-Wmaybe-uninitialized]
  708 |     if (idid <= 0) {
      |     ^~
par_solve.cpp:701:7: note: ‘idid’ was declared here
  701 |   int idid, itol=0;
      |       ^~~~
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c parseLinCmt.c -o parseLinCmt.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c print_node.c -o print_node.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c prja.c -o prja.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c qs.cpp -o qs.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rprintf.c -o rprintf.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rx2api.c -o rx2api.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxData.cpp -o rxData.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxInv.cpp -o rxInv.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxOptRep.cpp -o rxOptRep.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxStack.cpp -o rxStack.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxode2_df.cpp -o rxode2_df.o
In file included from rxode2_df.cpp:36:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable]
  223 |     int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
      |         ^~~~~~~
In function ‘handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
    inlined from ‘getTime__(int, rx_solving_options_ind*, int) [clone .constprop.0]’ at ../inst/include/rxode2parseGetTime.h:381:34:
../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
  314 |     if (infBidx == -1) return 0.0;
      |     ^~
../inst/include/rxode2parseGetTime.h: In function ‘getTime__(int, rx_solving_options_ind*, int) [clone .constprop.0]’:
../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here
  312 |     int infBidx;
      |         ^~~~~~~
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c rxthreefry.cpp -o rxthreefry.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c sbuf.c -o sbuf.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c scaleh.c -o scaleh.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c seed.cpp -o seed.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c solsy.c -o solsy.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c stoda.c -o stoda.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c strdup_printf.c -o strdup_printf.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c strncmp.c -o strncmp.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c strncmpi.c -o strncmpi.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c tran.c -o tran.o
In file included from parseFuns.h:151,
                 from tran.c:151:
parseFunsDosing.h: In function ‘handleFunctionTad’:
parseFunsDosing.h:86:61: warning: value computed is not used [-Wunused-value]
   86 |                         handleFunctionTadEmptyCcode(tf, v2) ||
      |                                                             ^~
In file included from tran.c:155:
parseAssignStr.h: In function ‘handleStrAssign’:
parseAssignStr.h:129:13: warning: unused variable ‘buf’ [-Wunused-variable]
  129 |       char *buf = tb.str.line[tb.id];
      |             ^~~
In file included from tran.c:156:
parseLevels.h: In function ‘handleLevelsStr1’:
parseLevels.h:94:11: warning: unused variable ‘n’ [-Wunused-variable]
   94 |       int n = get_str_assign_int(tb.id, v);
      |           ^
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c udf.cpp -o udf.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c utilc.c -o utilc.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/RcppEigen/include" -isystem'/usr/local/lib/R/library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -isystem/usr/include/oneapi -DTBB_INTERFACE_NEW -isystem'/usr/local/lib/R/library/StanHeaders/include/src'  -isystem"/usr/local/lib/R/library/Rcpp/include" -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c utilcpp.cpp -o utilcpp.o
gcc -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/sitmo/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/PreciseSums/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/StanHeaders/include' -I'/usr/local/lib/R/library/dparser/include' -I/usr/local/include   -D_isrxode2_ -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c vmnorm.c -o vmnorm.o
g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rxode2.so RcppExports.o approx.o boost.o box.o call_dvode.o cbindThetaOmega.o cfode.o cfode_static.o checkmate.o checkmate_stub.o codegen.o common.o corfailure.o correction.o cvPost.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o et.o etTran.o expandGrid.o expm.o fast_factor.o fnorm.o forder.o genModelVars.o getOption.o handle_evid.o idamax.o init.o intdy.o isEt.o lincmt.o lincmtB.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o parseLinCmt.o print_node.o prja.o qs.o rprintf.o rx2api.o rxData.o rxInv.o rxOptRep.o rxStack.o rxode2_df.o rxthreefry.o sbuf.o scaleh.o seed.o solsy.o stoda.o strdup_printf.o strncmp.o strncmpi.o tran.o udf.o utilc.o utilcpp.o vmnorm.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/usr/local/lib/R/library/RcppParallel/lib/ -Wl,-rpath,/usr/local/lib/R/library/RcppParallel/lib/ -ltbb -ltbbmalloc -L/usr/lib64 -Wl,-rpath,/usr/lib64 -ltbb -ltbbmalloc -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR
installing via 'install.libs.R' to /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT/usr/local/lib/R/library/00LOCK-rxode2/00new/rxode2
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rxode2’
    finding HTML links ... done
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    odeMethodToInt                          html  
    phi                                     html  
    plot.rxSolve                            html  
    plus-.rxSolve                           html  
    print.rxCoef                            html  
    print.rxDll                             html  
    print.rxModelVars                       html  
    print.rxode2                            html  
    probit                                  html  
    rLKJ1                                   html  
    reexports                               html  
    rinvchisq                               html  
    rxAllowUnload                           html  
    rxAppendModel                           html  
    rxAssignControlValue                    html  
    rxAssignPtr                             html  
    rxBlockZeros                            html  
    rxC                                     html  
    rxCat                                   html  
    rxCbindStudyIndividual                  html  
    rxChain                                 html  
    rxChain2                                html  
    rxClean                                 html  
    rxCombineErrorLines                     html  
    rxCompile                               html  
    rxCondition                             html  
    rxControlUpdateSens                     html  
    rxCreateCache                           html  
    rxD                                     html  
    rxDelete                                html  
    rxDemoteAddErr                          html  
    rxDerived                               html  
    rxDfdy                                  html  
    rxDll                                   html  
    rxDynLoad                               html  
    rxDynUnload                             html  
    rxErrTypeCombine                        html  
    rxEtDispatchSolve                       html  
    rxEvid                                  html  
    rxExpandFEta_                           html  
    rxExpandGrid                            html  
    rxExpandGrid_                           html  
    rxExpandIfElse                          html  
    rxExpandSens2_                          html  
    rxExpandSens_                           html  
    rxFixPop                                html  
    rxForget                                html  
    rxFun                                   html  
    rxFunParse                              html  
    rxGetControl                            html  
    rxGetDistributionSimulationLines        html  
    rxGetLin                                html  
    rxGetModel                              html  
    rxGetSeed                               html  
    rxGetrxode2                             html  
    rxHtml                                  html  
    rxIndLinState                           html  
    rxIndLinStrategy                        html  
    rxInits                                 html  
    rxInv                                   html  
    rxIs                                    html  
    rxIsCurrent                             html  
    rxIsLoaded                              html  
    rxLhs                                   html  
    rxLock                                  html  
    rxMd5                                   html  
    rxModelVars                             html  
    rxModels_                               html  
    rxNorm                                  html  
    rxOptExpr                               html  
    rxParams                                html  
    rxParseErr                              html  
    rxParsePk                               html  
    rxParsePred                             html  
    rxParseSetSilentErr                     html  
    rxParseSuppressMsg                      html  
    rxPkg                                   html  
    rxPp                                    html  
    rxPreferredDistributionName             html  
    rxProgress                              html  
    rxPrune                                 html  
    rxRateDur                               html  
    rxReload                                html  
    rxRemoveControl                         html  
    rxRename                                html  
    rxRepR0_                                html  
    rxReq                                   html  
    rxReservedKeywords                      html  
    rxResidualError                         html  
    rxRmvn                                  html  
    rxS                                     html  
    rxSeedEng                               html  
    rxSetControl                            html  
    rxSetCovariateNamesForPiping            html  
    rxSetIni0                               html  
    rxSetPipingAuto                         html  
    rxSetProd                               html  
    rxSetProgressBar                        html  
    rxSetSeed                               html  
    rxSetSilentErr                          html  
    rxSetSum                                html  
    rxSetupIni                              html  
    rxSetupScale                            html  
    rxShiny                                 html  
    rxSimThetaOmega                         html  
    rxSolve                                 html  
    rxSolveFree                             html  
    rxSolveSetup                            html  
    rxSplitPlusQ                            html  
    rxStack                                 html  
    rxState                                 html  
    rxSumProdModel                          html  
    rxSupportedFuns                         html  
    rxSuppressMsg                           html  
    rxSymInvChol                            html  
    rxSymInvCholCreate                      html  
    rxSymInvCholN                           html  
    rxSyncOptions                           html  
    rxSyntaxFunctions                       html  
    rxTempDir                               html  
    rxTheme                                 html  
    rxToSE                                  html  
    rxTrans                                 html  
    rxUiDecompress                          html  
    rxUiDeparse                             html  
    rxUiGet                                 html  
    rxUnloadAll                             html  
    rxUse                                   html  
    rxValidate                              html  
    rxVersion                               html  
    rxWithSeed                              html  
    rxbeta                                  html  
    rxbinom                                 html  
    rxcauchy                                html  
    rxchisq                                 html  
    rxexp                                   html  
    rxf                                     html  
    rxgamma                                 html  
    rxgeom                                  html  
    rxnbinom                                html  
    rxnormV                                 html  
    rxode2-set                              html  
    rxode2                                  html  
    rxode2parse                             html  
    rxode2parseAssignPackagesToLoad         html  
    rxode2parseAssignPointerTranslation     html  
    rxode2parseAssignTranslation            html  
    rxode2parseD                            html  
    rxode2parseGetPointerAssignment         html  
    rxode2parseGetTranslation               html  
    rxord                                   html  
    rxpois                                  html  
    rxt                                     html  
    rxunif                                  html  
    rxweibull                               html  
    stat_amt                                html  
    stat_cens                               html  
    summary.rxDll                           html  
    summary.rxode2                          html  
    swapMatListWithCube                     html  
    testRxLinCmt                            html  
    testRxUnbounded                         html  
    toTrialDuration                         html  
    update.rxUi                             html  
    uppergamma                              html  
    zeroRe                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2)
+ test -d rxode2/src
+ cd rxode2/src
+ rm -f RcppExports.o approx.o boost.o box.o call_dvode.o cbindThetaOmega.o cfode.o cfode_static.o checkmate.o checkmate_stub.o codegen.o common.o corfailure.o correction.o cvPost.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o et.o etTran.o expandGrid.o expm.o fast_factor.o fnorm.o forder.o genModelVars.o getOption.o handle_evid.o idamax.o init.o intdy.o isEt.o lincmt.o lincmtB.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o parseLinCmt.o print_node.o prja.o qs.o rprintf.o rx2api.o rxData.o rxInv.o rxOptRep.o rxStack.o rxode2_df.o rxthreefry.o sbuf.o scaleh.o seed.o solsy.o stoda.o strdup_printf.o strncmp.o strncmpi.o tran.o udf.o utilc.o utilcpp.o vmnorm.o rxode2.so
+ rm -f /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT/usr/local/lib/R/library/R.css
+ find /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT@@g '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.0.0-1.fc42.copr8032967 --unique-debug-suffix -3.0.0-1.fc42.copr8032967.x86_64 --unique-debug-src-base R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/rxode2
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.x86_64
cpio: rxode2/src/src/tran.g.d_parser.c: Cannot stat: No such file or directory
4761 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT
Scanned 42 directories and 1130 files,
               processed 879 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.x86_64
Provides: R-CRAN-rxode2 = 3.0.0-1.fc42.copr8032967 R-CRAN-rxode2(x86-64) = 3.0.0-1.fc42.copr8032967
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtbb.so.12()(64bit) rtld(GNU_HASH)
Processing files: R-CRAN-rxode2-debugsource-3.0.0-1.fc42.copr8032967.x86_64
Provides: R-CRAN-rxode2-debugsource = 3.0.0-1.fc42.copr8032967 R-CRAN-rxode2-debugsource(x86-64) = 3.0.0-1.fc42.copr8032967
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-CRAN-rxode2-debuginfo-3.0.0-1.fc42.copr8032967.x86_64
Provides: R-CRAN-rxode2-debuginfo = 3.0.0-1.fc42.copr8032967 R-CRAN-rxode2-debuginfo(x86-64) = 3.0.0-1.fc42.copr8032967 debuginfo(build-id) = 2f74a81fffa6561573f786e04af9cf44c2280562
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-CRAN-rxode2-debugsource(x86-64) = 3.0.0-1.fc42.copr8032967
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-rxode2-debugsource-3.0.0-1.fc42.copr8032967.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-rxode2-debuginfo-3.0.0-1.fc42.copr8032967.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.a1IKsQ
+ umask 022
+ cd /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ test -d /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ rm -rf /builddir/build/BUILD/R-CRAN-rxode2-3.0.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from
Finish: rpmbuild R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
Finish: build phase for R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1726710516.152598/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-rxode2-3.0.0-1.fc42.copr8032967.src.rpm) Config(child) 6 minutes 25 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "R-CRAN-rxode2",
            "epoch": null,
            "version": "3.0.0",
            "release": "1.fc42.copr8032967",
            "arch": "x86_64"
        },
        {
            "name": "R-CRAN-rxode2-debugsource",
            "epoch": null,
            "version": "3.0.0",
            "release": "1.fc42.copr8032967",
            "arch": "x86_64"
        },
        {
            "name": "R-CRAN-rxode2",
            "epoch": null,
            "version": "3.0.0",
            "release": "1.fc42.copr8032967",
            "arch": "src"
        },
        {
            "name": "R-CRAN-rxode2-debuginfo",
            "epoch": null,
            "version": "3.0.0",
            "release": "1.fc42.copr8032967",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished