Knowledge Graphs Constructions and Visualizations


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Documentation for package ‘kgraph’ version 1.0.0

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%$% Exposition pipe
%<>% Assignment pipe
%>% Pipe
build_kgraph Build a knowledge graph
build_kgraph_from_fit Build a knowledge graph from a fit object
cov_simi Covariance similarity
df_cuis_pairs A dataset containing CUIs pairs
df_embeds_dict A dictionary for the m_embeds object
df_pval A dataset containing GWAS p-values
df_pval_dict A dictionary for the df_pval object
dist_matrix dist_matrix
fit_embeds_kg Fit embeddings to a kgraph object
fit_embeds_to_pairs Fit embeds to pairs
gen_df_notpairs Generate null pairs
get_cutoff_threshold Get cut-off threshold
get_sgraph Wrapper to build a sgraph object fromk a kgraph object
m_embeds A dataset containing medical word embeddings
norm_inprod norm_inprod
project_pairs Predict known pairs
reshape_multiple_traits Reshape multiple traits in example data
reshape_multiple_traits_dict Reshape multiple traits in example data dictionary
sparse_encode sparse_encode
stddev_mean stddev_mean