plot_gnNIDP {neuroimaGene} | R Documentation |
Gene by NIDP summary plot of neuroimaGene object
Description
Generate overview plot of the neuroimagene object according to gene/NIDP pair
Usage
plot_gnNIDP(
ng_obj,
maxNidps = 20,
maxGns = 15,
title = NA,
shortnames = TRUE,
verbose = FALSE
)
Arguments
ng_obj |
NeuroimaGene object |
maxNidps |
maximum number of NIDPs to visualize. default=20 |
maxGns |
maximum number of genes to visualize. default=15 |
title |
optional title tag for the plot |
shortnames |
optional boolean tag for simplified names. Default to TRUE |
verbose |
print runtime messages to R console. Default to FALSE |
Value
a ggplot class heatmap showing tissue models per NIDP/Gene pair
Examples
gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
plot_gnNIDP(ng)
[Package neuroimaGene version 0.1.1 Index]