A Tidy Format Datasets of Dengue by Country


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Documentation for package ‘denguedatahub’ version 2.1.1

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americas_annual_data Dengue and severe dengue cases and deaths for subregions of the Americas
cdc_casesby_week All dengue cases by week in US states and territories, 2010 - 2023
cdc_dengue_agesex All dengue cases by age group and sex in US states and territories, 2010 - 2023
cdc_dengue_casesbyjurisdiction All dengue cases by jurisdiction of residence in US states and territories, 2010 - 2023
cdc_dengue_countyyear All dengue cases by county of residence in US states and territories, 2010 - 2023
cdc_local_dengue_cases Locally acquired dengue cases by year, 2010 - 2023
cdc_travel_associated_dengue_cases Travel associated dengue cases by year, 2010 - 2023
cdc_usa_dengue_infection Annual number of dengue fever infections in the USA
china_annual_data Dengue related data in China
convert_slwer_to_tidy Read weekly epidemiological reports and convert dengue data into tidy format
convert_srilanka_wer_to_tidy Read weekly epidemiological reports and convert dengue data into tidy format
download_pdfwer_srilanka Download and save weekly epidemiological reports from Epidemiology Unit, Ministry of Health, Sri Lanka (url https://www.epid.gov.lk/weekly-epidemiological-report/weekly-epidemiological-report)
filter_year_wer Filter links corresponds to a specific year using the function output get_address
get_addresses Extract links of all downloadable files on a webpage
get_pdflinks_srilanka Get URLs of weekly epidemiological reports from Epidemiology Unit, Ministry of Health, Sri Lanka (url https://www.epid.gov.lk/weekly-epidemiological-report/weekly-epidemiological-report)
india_annual_data DENGUE/DHF situation in India since 2017
korea_dengue Imported dengue cases in Korea
level_of_risk Level of Dengue risk around the world
min_max Apply min-max transformation
philippines_daily_data Daily number of dengue fever infections in Philippines
singapore_weekly_data Weekly number of dengue fever infections in Sri Lanka
sl_annual Annual reported dengue cases in Sri Lanka
sl_dengue_serotype Identification of dengue serotypes circulating in Sri Lanka
sl_sites Type and proportion of breeding habitats positive for Aedes aegypti mosquitoes, across provinces in Sri Lanka, 2017.
srilanka_weekly_data Weekly number of dengue fever infections in Sri Lanka
taiwan_dengue Indigenous and imported dengue cases in Taiwan, 1987-2023.
world_annual Annual number of dengue fever infections around the world