manhattan_plot {pcadapt} | R Documentation |
Manhattan Plot
Description
manhattan_plot
displays a Manhattan plot which represents the p-values
for each SNP for a particular test statistic.
Usage
manhattan_plot(x, chr.info, snp.info, plt.pkg = "ggplot", K = 1)
Arguments
x |
an object of class "pcadapt" generated with |
chr.info |
a list containing the chromosome information for each marker. |
snp.info |
a list containing the names of all genetic markers present in the input. |
plt.pkg |
a character string specifying the package to be used to
display the graphical outputs. Use |
K |
an integer specifying which principal component to display when
|
[Package pcadapt version 4.4.0 Index]