Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c197' (ED25519) to the list of known hosts. cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pcadapt_4.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pcadapt_4.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-pcadapt/pcadapt_4.4.0.tar.gz/md5/4c2996ff34e31be74b4813109134c5d3/pcadapt_4.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1675k 100 1675k 0 0 13.6M 0 --:--:-- --:--:-- --:--:-- 13.7M INFO: Reading stdout from command: md5sum pcadapt_4.4.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt/R-CRAN-pcadapt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727229136.805036 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt/R-CRAN-pcadapt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727229136.805036 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt/R-CRAN-pcadapt.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727229136.805036/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 235.6 KiB/s | 6.4 KiB | 00m00s Copr repository 100% | 4.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 11.9 MiB/s | 12.2 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-9.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-1.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-1.fc42 fedora 361.9 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 295-1.fc42 fedora 186.6 KiB rpm-build x86_64 4.19.94-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.16.0-4.fc42 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-1.fc41 fedora 2.2 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-7.fc41 fedora 153.5 KiB authselect-libs x86_64 1.5.0-7.fc41 fedora 818.3 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.1-1.fc42 fedora 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-9.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB curl x86_64 8.10.1-1.fc42 fedora 453.3 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.0-17.fc41 fedora 199.3 KiB dwz x86_64 0.15-7.fc41 fedora 290.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.191-8.fc41 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 fedora 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 fedora 646.2 KiB fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB fedora-release noarch 42-0.3 fedora 0.0 B fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B fedora-repos noarch 42-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.1-2.fc42 fedora 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-1.fc42 fedora 6.7 MiB glibc-common x86_64 2.40.9000-1.fc42 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-1.fc42 fedora 8.1 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-2.fc41 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-3.fc42 fedora 926.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-3.fc41 fedora 67.2 KiB libcurl x86_64 8.10.1-1.fc42 fedora 838.4 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-3.fc42 fedora 274.6 KiB libgomp x86_64 14.2.1-3.fc42 fedora 523.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.63.0-1.fc42 fedora 170.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-6.fc42 fedora 181.1 KiB libsemanage x86_64 3.7-3.fc42 fedora 298.0 KiB libsepol x86_64 3.7-3.fc42 fedora 818.0 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.5-0.fc41 fedora 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-7.fc41 fedora 266.8 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-8.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-6.fc42 fedora 1.8 MiB pam-libs x86_64 1.6.1-6.fc42 fedora 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.94-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.19.94-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.19.94-1.fc42 fedora 722.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.0-4.fc41 fedora 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 fedora 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-3.fc42 fedora 138.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). 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Importing PGP key 0x105EF944: Userid : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: Userid : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.fc42. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.fc42.noa [106/155] Installing krb5-libs-0:1.21.3 100% | 164.2 MiB/s | 2.3 MiB | 00m00s [107/155] Installing libarchive-0:3.7.4 100% | 181.4 MiB/s | 928.6 KiB | 00m00s [108/155] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [109/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [110/155] Installing authselect-libs-0: 100% | 81.4 MiB/s | 833.2 KiB | 00m00s [111/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [112/155] Installing libpwquality-0:1.4 100% | 46.7 MiB/s | 430.1 KiB | 00m00s [113/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [114/155] Installing pam-0:1.6.1-6.fc42 100% | 72.2 MiB/s | 1.9 MiB | 00m00s [115/155] Installing libssh-0:0.11.1-1. 100% | 139.6 MiB/s | 571.7 KiB | 00m00s [116/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [117/155] Installing rpm-libs-0:4.19.94 100% | 176.7 MiB/s | 723.6 KiB | 00m00s [118/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [119/155] Installing openldap-0:2.6.8-5 100% | 126.6 MiB/s | 648.0 KiB | 00m00s [120/155] Installing libcurl-0:8.10.1-1 100% | 205.0 MiB/s | 839.5 KiB | 00m00s [121/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [122/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [123/155] Installing elfutils-0:0.191-8 100% | 196.9 MiB/s | 2.6 MiB | 00m00s [124/155] Installing binutils-0:2.43.1- 100% | 243.7 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [125/155] Installing gdb-minimal-0:15.1 100% | 295.3 MiB/s | 13.0 MiB | 00m00s [126/155] Installing debugedit-0:5.0-17 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 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util-linux-0:2.40. 100% | 80.8 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1.1-1.fc4 100% | 135.8 KiB/s | 362.3 KiB | 00m03s >>> Running post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.fc42 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.94-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.94-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.10.1-1.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-2.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-1.fc42.x86_64 glibc-common-2.40.9000-1.fc42.x86_64 glibc-gconv-extra-2.40.9000-1.fc42.x86_64 glibc-minimal-langpack-2.40.9000-1.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-1.fc42.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.10.1-1.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-3.fc42.x86_64 libgomp-14.2.1-3.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-3.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-295-1.fc42.noarch rpm-4.19.94-1.fc42.x86_64 rpm-build-4.19.94-1.fc42.x86_64 rpm-build-libs-4.19.94-1.fc42.x86_64 rpm-libs-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.x86_64 sqlite-libs-3.46.0-4.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-3.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1727229136.805036/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727229136.805036/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_uf6skho/R-CRAN-pcadapt/R-CRAN-pcadapt.spec) Config(child) 0 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727229136.805036/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm Start: build setup for R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: fedora 100% | 219.3 KiB/s | 6.4 KiB | 00m00s Copr repository 100% | 22.6 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 15.5 MiB/s | 12.2 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-RSpectra x86_64 0.16.2-1.fc41.copr7752181 copr_base 1.3 MiB R-CRAN-Rcpp x86_64 1.0.13-1.fc41.copr7745410 copr_base 8.4 MiB R-CRAN-bigutilsr x86_64 0.3.4-1.fc41.copr7360134 copr_base 1.1 MiB R-CRAN-data.table x86_64 1.16.0-1.fc42.copr7948814 copr_base 3.9 MiB R-CRAN-ggplot2 noarch 3.5.1-1.fc41.copr7361224 copr_base 7.1 MiB R-CRAN-magrittr x86_64 2.0.3-1.fc41.copr7349936 copr_base 417.3 KiB R-CRAN-mmapcharr x86_64 0.3.0-3.fc41.copr7358294 copr_base 735.3 KiB R-CRAN-rmio noarch 0.4.0-1.fc41.copr7356279 copr_base 76.7 KiB R-devel x86_64 4.4.1-5.fc41 fedora 0.0 B Installing dependencies: R-CRAN-DEoptimR noarch 1.1.3-1.fc41.copr7349982 copr_base 115.8 KiB R-CRAN-MASS x86_64 7.3.61-1.fc41.copr7613806 copr_base 1.8 MiB R-CRAN-Matrix x86_64 1.7.0-1.fc41.copr7382390 copr_base 8.0 MiB R-CRAN-R6 noarch 2.5.1-1.fc41.copr7349938 copr_base 115.9 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc41.copr7349948 copr_base 63.6 KiB R-CRAN-RhpcBLASctl x86_64 0.23.42-1.fc41.copr7351768 copr_base 33.8 KiB R-CRAN-bigassertr noarch 0.1.6-1.fc41.copr7351813 copr_base 46.7 KiB R-CRAN-bigparallelr noarch 0.3.2-1.fc41.copr7358480 copr_base 71.8 KiB R-CRAN-bit x86_64 4.5.0-1.fc42.copr8046195 copr_base 1.6 MiB R-CRAN-cli x86_64 3.6.3-1.fc41.copr7649835 copr_base 2.4 MiB R-CRAN-codetools noarch 0.2.20-1.fc41.copr7352636 copr_base 106.3 KiB R-CRAN-colorspace x86_64 2.1.1-1.fc41.copr7795131 copr_base 4.0 MiB R-CRAN-doParallel noarch 1.0.17-1.fc41.copr7356118 copr_base 224.6 KiB R-CRAN-fansi x86_64 1.0.6-1.fc41.copr7349952 copr_base 625.8 KiB R-CRAN-farver x86_64 2.1.2-1.fc41.copr7442181 copr_base 2.1 MiB R-CRAN-ff x86_64 4.5.0-1.fc42.copr8046263 copr_base 2.1 MiB R-CRAN-flock x86_64 0.7-3.fc41.copr7353758 copr_base 91.5 KiB R-CRAN-foreach noarch 1.5.2-1.fc41.copr7353650 copr_base 378.1 KiB R-CRAN-glue x86_64 1.7.0-1.fc41.copr7349919 copr_base 261.2 KiB R-CRAN-gtable noarch 0.3.5-1.fc41.copr7356060 copr_base 306.7 KiB R-CRAN-isoband x86_64 0.2.7-1.fc41.copr7351195 copr_base 1.9 MiB R-CRAN-iterators noarch 1.0.14-1.fc41.copr7350017 copr_base 438.6 KiB R-CRAN-labeling noarch 0.4.3-1.fc41.copr7349947 copr_base 92.7 KiB R-CRAN-lattice x86_64 0.22.6-1.fc41.copr7352639 copr_base 2.0 MiB R-CRAN-lifecycle noarch 1.0.4-1.fc41.copr7354340 copr_base 282.7 KiB R-CRAN-mgcv x86_64 1.9.1-1.fc41.copr7357272 copr_base 4.5 MiB R-CRAN-munsell noarch 0.5.1-1.fc41.copr7353599 copr_base 379.0 KiB R-CRAN-nabor x86_64 0.5.0-2.fc33 copr_base 517.6 KiB R-CRAN-nlme x86_64 3.1.166-1.fc42.copr7936970 copr_base 3.8 MiB R-CRAN-parallelly x86_64 1.38.0-1.fc41.copr7798650 copr_base 584.1 KiB R-CRAN-pillar noarch 1.9.0-1.fc41.copr7357931 copr_base 1.4 MiB R-CRAN-pkgconfig noarch 2.0.3-3.fc41.copr7349937 copr_base 34.0 KiB R-CRAN-rlang x86_64 1.1.4-1.fc41.copr7531082 copr_base 2.6 MiB R-CRAN-robustbase x86_64 0.99.4-1.fc42.copr7936849 copr_base 4.1 MiB R-CRAN-scales noarch 1.3.0-1.fc41.copr7356067 copr_base 1.1 MiB R-CRAN-tibble x86_64 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fedora 15.0 KiB libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB libXau-devel x86_64 1.0.11-7.fc41 fedora 6.4 KiB libXcomposite x86_64 0.4.6-4.fc41 fedora 44.5 KiB libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB libXext-devel x86_64 1.3.6-2.fc41 fedora 98.9 KiB libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB libXft-devel x86_64 2.3.8-7.fc41 fedora 31.7 KiB libXi x86_64 1.8.2-1.fc42 fedora 80.7 KiB libXmu x86_64 1.2.1-2.fc41 fedora 191.5 KiB libXrender x86_64 0.9.11-7.fc41 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-7.fc41 fedora 50.1 KiB libXt x86_64 1.3.0-4.fc41 fedora 429.9 KiB libXtst x86_64 1.2.5-1.fc41 fedora 33.6 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libblkid-devel x86_64 2.40.2-8.fc42 fedora 44.9 KiB libdatrie x86_64 0.2.13-10.fc41 fedora 57.9 KiB libdeflate x86_64 1.21-2.fc41 fedora 117.0 KiB libdeflate-devel x86_64 1.21-2.fc41 fedora 25.7 KiB libffi-devel x86_64 3.4.6-3.fc42 fedora 33.1 KiB libfontenc x86_64 1.1.8-2.fc41 fedora 67.0 KiB libgfortran x86_64 14.2.1-3.fc42 fedora 3.0 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.4-1.fc42 fedora 789.1 KiB liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB libmount-devel x86_64 2.40.2-8.fc42 fedora 63.5 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libpng x86_64 2:1.6.44-1.fc42 fedora 245.8 KiB libpng-devel x86_64 2:1.6.44-1.fc42 fedora 886.0 KiB libquadmath x86_64 14.2.1-3.fc42 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc42 fedora 21.9 KiB libselinux-devel x86_64 3.7-6.fc42 fedora 126.5 KiB libsepol-devel x86_64 3.7-3.fc42 fedora 120.3 KiB libstdc++-devel x86_64 14.2.1-3.fc42 fedora 15.4 MiB libtextstyle x86_64 0.22.5-6.fc41 fedora 195.6 KiB libthai x86_64 0.1.29-9.fc41 fedora 783.5 KiB libtiff x86_64 4.6.0-6.fc42 fedora 606.0 KiB libtirpc-devel x86_64 1.3.5-0.fc41 fedora 251.6 KiB libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB libxcb x86_64 1.17.0-2.fc41 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-2.fc41 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.36-7.fc41 fedora 30.3 KiB libxml2-devel x86_64 2.12.8-2.fc41 fedora 3.4 MiB lksctp-tools x86_64 1.0.19-9.fc41 fedora 275.2 KiB lua x86_64 5.4.6-6.fc41 fedora 601.7 KiB lua-posix x86_64 36.2.1-7.fc41 fedora 599.8 KiB make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB mkfontscale x86_64 1.2.3-1.fc41 fedora 49.2 KiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB nspr x86_64 4.35.0-29.fc42 fedora 320.4 KiB nss x86_64 3.104.0-1.fc42 fedora 1.9 MiB nss-softokn x86_64 3.104.0-1.fc42 fedora 1.9 MiB nss-softokn-freebl x86_64 3.104.0-1.fc42 fedora 783.6 KiB nss-sysinit x86_64 3.104.0-1.fc42 fedora 22.2 KiB nss-util x86_64 3.104.0-1.fc42 fedora 205.1 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB openblas-openmp64 x86_64 0.3.26-5.fc41 fedora 39.5 MiB pango x86_64 1.54.0-2.fc41 fedora 996.2 KiB pcre2-devel x86_64 10.44-1.fc41.1 fedora 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc41.1 fedora 590.1 KiB pcre2-utf32 x86_64 10.44-1.fc41.1 fedora 562.0 KiB pixman x86_64 0.43.4-2.fc41 fedora 718.1 KiB pixman-devel x86_64 0.43.4-2.fc41 fedora 49.4 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python3 x86_64 3.13.0~rc2-3.fc42 fedora 31.8 KiB python3-libs x86_64 3.13.0~rc2-3.fc42 fedora 40.3 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB sysprof-capture-devel x86_64 47.0-1.fc42 fedora 273.2 KiB tcl x86_64 1:8.6.14-2.fc41 fedora 4.2 MiB tcl-devel x86_64 1:8.6.14-2.fc41 fedora 791.3 KiB tk x86_64 1:8.6.14-2.fc41 fedora 3.6 MiB tk-devel x86_64 1:8.6.14-2.fc41 fedora 984.9 KiB tre x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 75.9 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB tre-devel x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-71.fc41 fedora 122.7 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB tzdata-java noarch 2024a-9.fc41 fedora 101.7 KiB xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel x86_64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel x86_64 2.1.7-3.fc42 fedora 106.8 KiB Transaction Summary: Installing: 208 packages Total size of inbound packages is 317 MiB. 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>>> Running trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:295-1.fc42.noarch >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2. >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc4 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_ >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc4 >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1.1-1.fc42.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.1-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.1-1.fc42.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.1-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.1-1.fc42.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Warning: skipped PGP checks for 48 package(s). Finish: build setup for R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm Start: rpmbuild R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.3C0d0M + umask 022 + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + test -d /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + /usr/bin/rm -rf /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2QCHeh + umask 022 + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + rm -rf pcadapt + /usr/bin/mkdir -p pcadapt + cd pcadapt + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pcadapt_4.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d pcadapt/src ']' + find pcadapt/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d pcadapt/src ']' + find pcadapt/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.THlkrF + umask 022 + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pcadapt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wNxOKr + umask 022 + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + '[' /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + mkdir /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pcadapt + mkdir -p /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT/usr/local/lib/R/library pcadapt * installing *source* package ‘pcadapt’ ... ** package ‘pcadapt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c af.cpp -o af.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-acc-xptr.cpp -o bed-acc-xptr.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed2matrix.cpp -o bed2matrix.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping.cpp -o clumping.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c linear-regression.cpp -o linear-regression.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nb-na.cpp -o nb-na.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pedUtils.cpp -o pedUtils.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c prodMat.cpp -o prodMat.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c total-var.cpp -o total-var.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c vcfUtils.cpp -o vcfUtils.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'/usr/local/lib/R/library/mmapcharr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/rmio/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c writebed.cpp -o writebed.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o pcadapt.so RcppExports.o af.o bed-acc-xptr.o bed2matrix.o clumping.o linear-regression.o nb-na.o pedUtils.o prodMat.o total-var.o vcfUtils.o writebed.o -lflexiblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT/usr/local/lib/R/library/00LOCK-pcadapt/00new/pcadapt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘pcadapt’ finding HTML links ... done bed2matrix html get.pc html get.pop.names html get.score.color html get_statistics html hist_plot html manhattan_plot html pcadapt html ped2pcadapt html plot.pcadapt html print_convert html qq_plot html read.pcadapt html run.pcadapt html score_plot html scree_plot html vcf2pcadapt html vcf_convert html writeBed html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcadapt) + test -d pcadapt/src + cd pcadapt/src + rm -f RcppExports.o af.o bed-acc-xptr.o bed2matrix.o clumping.o linear-regression.o nb-na.o pedUtils.o prodMat.o total-var.o vcfUtils.o writebed.o pcadapt.so + rm -f /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.4.0-1.fc42.copr8067872 --unique-debug-suffix -4.4.0-1.fc42.copr8067872.x86_64 --unique-debug-src-base R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/pcadapt find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.x86_64 86 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT Scanned 41 directories and 122 files, processed 42 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.x86_64 Provides: R-CRAN-pcadapt = 4.4.0-1.fc42.copr8067872 R-CRAN-pcadapt(x86-64) = 4.4.0-1.fc42.copr8067872 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-pcadapt-debugsource-4.4.0-1.fc42.copr8067872.x86_64 Provides: R-CRAN-pcadapt-debugsource = 4.4.0-1.fc42.copr8067872 R-CRAN-pcadapt-debugsource(x86-64) = 4.4.0-1.fc42.copr8067872 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-pcadapt-debuginfo-4.4.0-1.fc42.copr8067872.x86_64 Provides: R-CRAN-pcadapt-debuginfo = 4.4.0-1.fc42.copr8067872 R-CRAN-pcadapt-debuginfo(x86-64) = 4.4.0-1.fc42.copr8067872 debuginfo(build-id) = 50d454f1af2e5f78b769d0e964fee914727b823a Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-pcadapt-debugsource(x86-64) = 4.4.0-1.fc42.copr8067872 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-pcadapt-debuginfo-4.4.0-1.fc42.copr8067872.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-pcadapt-debugsource-4.4.0-1.fc42.copr8067872.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.wtD2KB + umask 022 + cd /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + test -d /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + rm -rf /builddir/build/BUILD/R-CRAN-pcadapt-4.4.0-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm Finish: build phase for R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727229136.805036/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-pcadapt-4.4.0-1.fc42.copr8067872.src.rpm) Config(child) 1 minutes 3 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-pcadapt-debugsource", "epoch": null, "version": "4.4.0", "release": "1.fc42.copr8067872", "arch": "x86_64" }, { "name": "R-CRAN-pcadapt", "epoch": null, "version": "4.4.0", "release": "1.fc42.copr8067872", "arch": "x86_64" }, { "name": "R-CRAN-pcadapt", "epoch": null, "version": "4.4.0", "release": "1.fc42.copr8067872", "arch": "src" }, { "name": "R-CRAN-pcadapt-debuginfo", "epoch": null, "version": "4.4.0", "release": "1.fc42.copr8067872", "arch": "x86_64" } ] } RPMResults finished