%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MultIS
%global packver   0.6.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.6.2
Release:          1%{?dist}%{?buildtag}
Summary:          Reconstruction of Clones from Integration Site Readouts and Visualization

License:          LGPL
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-clValid 
BuildRequires:    R-CRAN-cluster 
BuildRequires:    R-CRAN-clv 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-ltm 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-poweRlaw 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rmutil 
Requires:         R-CRAN-clValid 
Requires:         R-CRAN-cluster 
Requires:         R-CRAN-clv 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-ltm 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-poweRlaw 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rmutil 

%description
Tools necessary to reconstruct clonal affiliations from temporally and/or
spatially separated measurements of viral integration sites. For this
means it utilizes correlations present in the relative readouts of the
integration sites. Furthermore, facilities for filtering of the data and
visualization of different steps in the pipeline are provided with the
package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}