name_and_count_bigsnp {plmmr} | R Documentation |
A helper function to label and summarize the contents of a bigSNP
Description
A helper function to label and summarize the contents of a bigSNP
Usage
name_and_count_bigsnp(obj, id_var, quiet, outfile)
Arguments
obj |
a |
id_var |
String specifying which column of the PLINK |
quiet |
Logical: should messages be printed to the console? Defaults to TRUE |
outfile |
The string with the name of the .log file |
Value
a list with components:
counts: column-wise summary of the minor allele counts in 'genotypes'
obj: a modified
bigSNP
list with additional componentsX: the
obj$genotypes
as its own FBMpos: the
obj$map$physical.pos
vector
[Package plmmr version 4.1.0 Index]