activations | Activations of (spatial) template ICA |
bdiag_m2 | Bdiag m2 |
Chol_samp_fun | Cholesky-based FC sampling |
dim_reduce | PCA-based Dimension Reduction and Prewhitening |
EM_templateICA | EM Algorithms for Template ICA Models |
EM_templateICA.independent | EM Algorithms for Template ICA Models |
EM_templateICA.spatial | EM Algorithms for Template ICA Models |
estimate.ESS | Estimation of effective sample size |
estimate_nu | Universally estimate IW dof parameter nu based on method of moments, so that no empirical variance is under-estimated |
estimate_nu_matrix | Estimate IW dof parameter nu based on method of moments |
estimate_template | Estimate template |
estimate_template.cifti | Estimate template |
estimate_template.gifti | Estimate template |
estimate_template.nifti | Estimate template |
estimate_template_FC | Estimate FC template |
estimate_template_from_DR | Estimate template from DR |
export_template | Export template |
getInvCovAR | Compute inverse covariance matrix for AR process (up to a constant scaling factor) |
groupICA.cifti | Perform group ICA based on CIFTI data |
IW_var | Compute theoretical Inverse-Wishart variance of covariance matrix elements |
IW_var_cor | Compute theoretical Inverse-Wishart variance of correlation matrix elements |
lik | Compute likelihood in SPDE model for ESS estimation |
make_mesh | Make INLA mesh from '"surf"' object |
make_mesh_2D | Make 2D INLA mesh |
norm_BOLD | Normalize BOLD data |
orthonorm | Orthonormalizes a square, invertible matrix |
plot.template.cifti | Plot template |
plot.template.gifti | Plot template |
plot.template.matrix | Plot template |
plot.template.nifti | Plot template |
plot.tICA.cifti | Plot template |
plot.tICA.matrix | Plot template |
plot.tICA.nifti | Plot template |
plot.tICA_act.cifti | Plot activations |
print.summary.template.cifti | Summarize a '"template.cifti"' object |
print.summary.template.gifti | Summarize a '"template.gifti"' object |
print.summary.template.matrix | Summarize a '"template.matrix"' object |
print.summary.template.nifti | Summarize a '"template.nifti"' object |
print.summary.tICA.cifti | Summarize a '"tICA.cifti"' object |
print.summary.tICA.matrix | Summarize a '"tICA.matrix"' object |
print.summary.tICA.nifti | Summarize a '"tICA.nifti"' object |
print.summary.tICA_act.cifti | Summarize a '"tICA_act.cifti"' object |
print.summary.tICA_act.matrix | Summarize a '"tICA_act.matrix"' object |
print.summary.tICA_act.nifti | Summarize a '"tICA_act.nifti"' object |
print.template.cifti | Summarize a '"template.cifti"' object |
print.template.gifti | Summarize a '"template.gifti"' object |
print.template.matrix | Summarize a '"template.matrix"' object |
print.template.nifti | Summarize a '"template.nifti"' object |
print.tICA.cifti | Summarize a '"tICA.cifti"' object |
print.tICA.matrix | Summarize a '"tICA.matrix"' object |
print.tICA.nifti | Summarize a '"tICA.nifti"' object |
print.tICA_act.cifti | Summarize a '"tICA_act.cifti"' object |
print.tICA_act.matrix | Summarize a '"tICA_act.matrix"' object |
print.tICA_act.nifti | Summarize a '"tICA_act.nifti"' object |
pw_estimate | Estimate residual autocorrelation for prewhitening |
resample_template | Resample CIFTI template |
sqrt_XtX | Compute matrix square root of X'X |
summary.template.cifti | Summarize a '"template.cifti"' object |
summary.template.gifti | Summarize a '"template.gifti"' object |
summary.template.matrix | Summarize a '"template.matrix"' object |
summary.template.nifti | Summarize a '"template.nifti"' object |
summary.tICA.cifti | Summarize a '"tICA.cifti"' object |
summary.tICA.matrix | Summarize a '"tICA.matrix"' object |
summary.tICA.nifti | Summarize a '"tICA.nifti"' object |
summary.tICA_act.cifti | Summarize a '"tICA_act.cifti"' object |
summary.tICA_act.matrix | Summarize a '"tICA_act.matrix"' object |
summary.tICA_act.nifti | Summarize a '"tICA_act.nifti"' object |
templateICA | Template ICA |
UpdateTheta_templateICA | Parameter Estimates in EM Algorithm for Template ICA Model |
UpdateTheta_templateICA.independent | Parameter Estimates in EM Algorithm for Template ICA Model |
UpdateTheta_templateICA.spatial | Parameter Estimates in EM Algorithm for Template ICA Model |
UT2mat | Transform upper-triangular elements to matrix form |
var_sq_err | Compute the error between empirical and theoretical variance of covariance matrix elements |
var_sq_err_constrained | Compute the overall error between empirical and theoretical variance of CORRELATION matrix elements |