meme_plot {BioVizSeq} | R Documentation |
meme_plot
Description
Visualization of motif in meme file or mast file
Usage
meme_plot(
meme_file,
the_order = NULL,
motif_select = NULL,
shape = "RoundRect",
show_motif_id = FALSE,
r = 0.3,
legend_size = 15,
motif_color = NULL
)
Arguments
meme_file |
The path of meme file or mast file. |
the_order |
The path of order file. A List of Gene ID , One ID Per Line. |
motif_select |
The motif ID which you want to align with. |
shape |
RoundRect or Rect. |
show_motif_id |
Display the name of the motif. |
r |
The radius of rounded corners. |
legend_size |
The size of legend. |
motif_color |
The color set of motif. |
Value
p
Author(s)
Shiqi Zhao
Examples
meme_path <- system.file("extdata", "meme.xml", package = "BioVizSeq")
meme_plot(meme_path)
mast_path <- system.file("extdata", "mast.xml", package = "BioVizSeq")
meme_plot(mast_path)
meme_plot(meme_path, motif_select="1", show_motif_id = TRUE)
order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
meme_plot(meme_path, the_order=order_path, motif_select="1")
[Package BioVizSeq version 0.1.1 Index]