summariseSequenceRatios {CohortSymmetry}R Documentation

Sequence ratio calculations

Description

Using generateSequenceCohortSet to obtain sequence ratios for the desired outcomes.

Usage

summariseSequenceRatios(
  cohort,
  cohortId = NULL,
  confidenceInterval = 95,
  minCellCount = 5
)

Arguments

cohort

A cohort table in the cdm.

cohortId

The Ids in the cohort that are to be included in the analyses.

confidenceInterval

Default is 95, indicating the central 95% confidence interval.

minCellCount

The minimum number of events to reported, below which results will be obscured. If 0, all results will be reported.

Value

A local table with all the analyses.

Examples


library(CohortSymmetry)
cdm <- mockCohortSymmetry()
cdm <- generateSequenceCohortSet(cdm = cdm,
                                 name = "joined_cohorts",
                                 indexTable = "cohort_1",
                                 markerTable = "cohort_2")
pssa_result <- summariseSequenceRatios(cohort = cdm$joined_cohorts, minCellCount = 0)
pssa_result
CDMConnector::cdmDisconnect(cdm)



[Package CohortSymmetry version 0.2.0 Index]