%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname gfoRmulaICE %global packver 0.1.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.1.0 Release: 1%{?dist}%{?buildtag} Summary: Parametric Iterative Conditional Expectation G-Formula License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 2.10 Requires: R-core >= 2.10 BuildArch: noarch BuildRequires: R-CRAN-data.table BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-nnet BuildRequires: R-CRAN-doParallel BuildRequires: R-parallel BuildRequires: R-CRAN-foreach BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-reshape2 BuildRequires: R-CRAN-speedglm BuildRequires: R-methods BuildRequires: R-CRAN-Hmisc BuildRequires: R-splines Requires: R-CRAN-data.table Requires: R-CRAN-ggplot2 Requires: R-CRAN-nnet Requires: R-CRAN-doParallel Requires: R-parallel Requires: R-CRAN-foreach Requires: R-CRAN-stringr Requires: R-CRAN-magrittr Requires: R-CRAN-dplyr Requires: R-CRAN-rlang Requires: R-CRAN-reshape2 Requires: R-CRAN-speedglm Requires: R-methods Requires: R-CRAN-Hmisc Requires: R-splines %description Implements iterative conditional expectation (ICE) estimators of the plug-in g-formula (Wen, Young, Robins, and Hernán (2020) <doi: 10.1111/biom.13321>). Both singly robust and doubly robust ICE estimators based on parametric models are available. The package can be used to estimate survival curves under sustained treatment strategies (interventions) using longitudinal data with time-varying treatments, time-varying confounders, censoring, and competing events. The interventions can be static or dynamic, and deterministic or stochastic (including threshold interventions). Both prespecified and user-defined interventions are available. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}