Case_Check {scCustomize} | R Documentation |
Check for alternate case features
Description
Checks Seurat object for the presence of features with the same spelling but alternate case.
Usage
Case_Check(
seurat_object,
gene_list,
case_check_msg = TRUE,
return_features = TRUE,
assay = NULL
)
Arguments
seurat_object |
Seurat object name. |
gene_list |
vector of genes to check. |
case_check_msg |
logical. Whether to print message to console if alternate case features are found in addition to inclusion in returned list. Default is TRUE. |
return_features |
logical. Whether to return vector of alternate case features. Default is TRUE. |
assay |
Name of assay to pull feature names from. If NULL will use the result of |
Value
If features found returns vector of found alternate case features and prints message depending on parameters specified.
Examples
## Not run:
alt_features <- Case_Check(seurat_object = obj_name, gene_list = DEG_list)
## End(Not run)
[Package scCustomize version 3.0.0 Index]