Updated_MGI_Symbols {scCustomize} | R Documentation |
Update MGI Gene Symbols
Description
Update mouse gene symbols using data from MGI This function will store cached data in package directory using (BiocFileCache). Use of this function requires internet connection on first use (or if setting update_symbol_data = TRUE
). Subsequent use does not require connection and will pull from cached data.
Usage
Updated_MGI_Symbols(input_data, update_symbol_data = NULL, verbose = TRUE)
Arguments
input_data |
Data source containing gene names. Accepted formats are:
|
update_symbol_data |
logical, whether to update cached MGI data, default is NULL.
If |
verbose |
logical, whether to print results detailing numbers of symbols, found, updated, and not found; default is TRUE. |
Value
data.frame containing columns: input_features, Approved_Symbol (already approved; output unchanged), Not_Found_Symbol (symbol not in MGI; output unchanged), Updated_Symbol (new symbol from MGI; output updated).
Examples
## Not run:
new_names <- Updated_MGI_Symbols(input_data = Seurat_Object)
## End(Not run)