ensembl_ieg_list {scCustomize}R Documentation

Immediate Early Gene (IEG) gene lists

Description

Ensembl IDs for immediate early genes (Ensembl version 112; 4/29/2024)

Usage

ensembl_ieg_list

Format

A list of seven vectors

Mus_musculus_IEGs

Ensembl IDs for IEGs from source publication (see below)

Homo_sapiens_IEGs

Ensembl IDs for homologous genes from mouse gene list

Source

Mouse gene list is from: SI Table 4 from doi:10.1016/j.neuron.2017.09.026. Human gene list was compiled by first creating homologous gene list using biomaRt and then adding some manually curated homologs according to HGNC. See data-raw directory for scripts used to create gene list.


[Package scCustomize version 3.0.0 Index]