Idents.liger {scCustomize} | R Documentation |
Extract or set default identities from object
Description
Extract default identities from object in factor form.
Usage
## S3 method for class 'liger'
Idents(object, ...)
## S3 replacement method for class 'liger'
Idents(object, ...) <- value
Arguments
object |
LIGER object name. |
... |
Arguments passed to other methods |
value |
name of column in cellMeta slot to set as new default cluster/ident |
Value
factor
object
Note
Use of Idents<- is only for setting new default ident/cluster from column already present in cellMeta.
To add new column with new cluster values to cellMeta and set as default see Rename_Clusters
.
Examples
## Not run:
# Extract idents
object_idents <- Idents(object = liger_object)
## End(Not run)
## Not run:
# Set idents
Idents(object = liger_object) <- "new_annotation"
## End(Not run)
[Package scCustomize version 3.0.0 Index]