addCodelistAttribute {PhenotypeR}R Documentation

Adds the cohort_codelist attribute to a cohort

Description

'addCodelistAttribute()' allows the users to add a codelist to a cohort in OMOP CDM.

This is particularly important for the use of 'codelistDiagnostics()', as the underlying assumption is that the cohort that is fed into 'codelistDiagnostics()' has a cohort_codelist attribute attached to it.

Usage

addCodelistAttribute(cohort, codelist, cohortName = names(codelist))

Arguments

cohort

Cohort table in a cdm reference

codelist

Named list of concepts

cohortName

For each element of the codelist, the name of the cohort in 'cohort' to which the codelist refers

Value

A cohort

Examples


library(IncidencePrevalence)
cdm <- mockIncidencePrevalenceRef(sampleSize = 1000)
cohort <- addCodelistAttribute(cohort = cdm$outcome, codelist = list("cohort_1" = 1L))
CDMConnector::cdm_disconnect(cdm)


[Package PhenotypeR version 0.1.0 Index]