Virusparies {Virusparies}R Documentation

Virusparies Package

Description

Virusparies designed for visualizing output from VirusHunterGatherer.

Details

VirusHunterGatherer is a pipeline designed for data-driven virus discovery (DDVD). It involves two steps: (i) Virushunter conducts sensitive homology-based detection of viral sequence reads in unprocessed data, identifying the most conserved regions of a virus, which serve as seeds for the (ii) Virusgatherer step that assembles full-length viral genome sequences.

The Virusparies package provides a set of plotting functions tailored for visualizing VirushunterGatherer hittables. The name draws inspiration from the hunter-gatherer metaphor, with "paries" derived from Latin meaning "wall". It symbolizes the parietal art left by ancient hunters and gatherers on walls, summarizing their stories and beliefs.

Functions

This package includes the following functions:

Import:

VirusHunterGatherer Plots:

VirusGatherer only plots:

Graphical Tables(gt):

Export:

Utils:

Author(s)

Maintainer: Sergej Ruff (serijnh@gmail.com)

Other contributors:

If you have any questions, suggestions, or issues, please feel free to contact Sergej Ruff (serijnh@gmail.com).

See Also

VirusHunterGatherer is available on: https://github.com/lauberlab/VirusHunterGatherer.

If you encounter any errors or issues, please report them at: https://github.com/SergejRuff/Virusparies/issues.


[Package Virusparies version 1.1.0 Index]