Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14d' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8414039-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.2 PID: 15713 Logging PID: 15714 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8414039, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '1e37cfba30de41f623bd75359fbd458c89c84f67', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-scCustomize', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-scCustomize', 'package_version': '3.0.1-1.copr8414039', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8414039-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-scCustomize /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-scCustomize', '/var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize'... Running: git checkout 1e37cfba30de41f623bd75359fbd458c89c84f67 -- cmd: ['git', 'checkout', '1e37cfba30de41f623bd75359fbd458c89c84f67', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize rc: 0 stdout: stderr: Note: switching to '1e37cfba30de41f623bd75359fbd458c89c84f67'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1e37cfb automatic import of R-CRAN-scCustomize Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading scCustomize_3.0.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o scCustomize_3.0.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-scCustomize/scCustomize_3.0.1.tar.gz/md5/b77834b715ee006959e37300acf30ad0/scCustomize_3.0.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 898k 100 898k 0 0 7202k 0 --:--:-- --:--:-- --:--:-- 7249k INFO: Reading stdout from command: md5sum scCustomize_3.0.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize/R-CRAN-scCustomize.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734573136.386465 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize/R-CRAN-scCustomize.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734573136.386465 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize/R-CRAN-scCustomize.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734573136.386465/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 787.7 KiB/s | 26.0 KiB | 00m00s Copr repository 100% | 29.0 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 7.6 MiB/s | 12.4 MiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-11.fc42 fedora 5.4 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.11 fedora 19.8 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-24.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-2.fc42 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 296-1.fc42 fedora 186.6 KiB rpm-build x86_64 4.20.0-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.17.0~rc1-1.fc42 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-65.fc42 fedora 398.2 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.3-2.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.4.3-1.fc42 fedora 2.4 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-8.fc42 fedora 157.5 KiB authselect-libs x86_64 1.5.0-8.fc42 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.50-9.fc42 fedora 25.8 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-3.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-11.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl x86_64 8.11.1-2.fc42 fedora 452.0 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-2.fc42 fedora 200.3 KiB dwz x86_64 0.15-8.fc42 fedora 299.2 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils x86_64 0.192-7.fc42 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.192-7.fc42 fedora 81.4 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-7.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-7.fc42 fedora 662.9 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.11 fedora 0.0 B fedora-release-identity-basic noarch 42-0.11 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file x86_64 5.45-8.fc42 fedora 103.7 KiB file-libs x86_64 5.45-8.fc42 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-4.fc42 fedora 12.7 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-24.fc42 fedora 6.7 MiB glibc-common x86_64 2.40.9000-24.fc42 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-24.fc42 fedora 8.0 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson x86_64 2.14-1.fc42 fedora 93.1 KiB json-c x86_64 0.18-1.fc42 fedora 83.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-3.fc42 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.7-1.fc42 fedora 932.3 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.71-1.fc42 fedora 210.8 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc42 fedora 67.2 KiB libcurl x86_64 8.11.1-2.fc42 fedora 817.3 KiB libeconf x86_64 0.7.5-1.fc42 fedora 66.7 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-6.fc42 fedora 270.6 KiB libgomp x86_64 14.2.1-6.fc42 fedora 519.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.64.0-1.fc42 fedora 174.5 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.8-0.rc1.2.fc42 fedora 191.6 KiB libsemanage x86_64 3.8-0.rc1.1.fc42 fedora 305.3 KiB libsepol x86_64 3.8-0.rc1.1.fc42 fedora 822.0 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-6.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.6-1.fc42 fedora 205.5 KiB libtool-ltdl x86_64 2.5.4-1.fc42 fedora 68.1 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-11.fc42 fedora 271.4 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.7-1.fc42 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-6.fc42 fedora 647.4 KiB openssl-libs x86_64 1:3.2.2-8.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-4.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc42 fedora 403.8 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.7.0-3.fc42 fedora 1.8 MiB pam-libs x86_64 1.7.0-3.fc42 fedora 139.4 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.20.0-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 fedora 726.1 KiB rpm-sequoia x86_64 1.7.0-3.fc42 fedora 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.47.2-1.fc42 fedora 1.4 MiB systemd-libs x86_64 257-1.fc42 fedora 2.2 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 fedora 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 fedora 218.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-42.fc42 fedora 695.9 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 fedora 134.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 179 MiB extra will be used (install 179 MiB, remove 0 B). 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downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/154] libtool-ltdl-0:2.5.4-1.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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00m00s [128/156] Installing debugedit-0:5.1-2. 100% | 66.1 MiB/s | 203.0 KiB | 00m00s [129/156] Installing curl-0:8.11.1-2.fc 100% | 17.1 MiB/s | 454.5 KiB | 00m00s [130/156] Installing rpm-0:4.20.0-1.fc4 100% | 83.5 MiB/s | 2.5 MiB | 00m00s [131/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [132/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [133/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [134/156] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [135/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [136/156] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0 B | 00m00s [137/156] Installing perl-srpm-macros-0 100% | 1.1 MiB/s | 1.1 KiB | 00m00s [138/156] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [139/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [140/156] Installing ocaml-srpm-macros- 100% | 2.1 MiB/s | 2.2 KiB | 00m00s [141/156] Installing kernel-srpm-macros 100% | 2.3 MiB/s | 2.3 KiB | 00m00s [142/156] Installing gnat-srpm-macros-0 100% | 1.2 MiB/s | 1.3 KiB | 00m00s [143/156] Installing ghc-srpm-macros-0: 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [144/156] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0 B | 00m00s [145/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 47.2 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 39.6 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 82.6 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 31.6 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 112.3 KiB/s | 362.2 KiB | 00m03s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-9.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch coreutils-9.5-11.fc42.x86_64 coreutils-common-9.5-11.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-2.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.x86_64 elfutils-debuginfod-client-0.192-7.fc42.x86_64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.x86_64 elfutils-libs-0.192-7.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.x86_64 file-libs-5.45-8.fc42.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-4.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-24.fc42.x86_64 glibc-common-2.40.9000-24.fc42.x86_64 glibc-gconv-extra-2.40.9000-24.fc42.x86_64 glibc-minimal-langpack-2.40.9000-24.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.11.1-2.fc42.x86_64 libeconf-0.7.5-1.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.8-0.rc1.2.fc42.x86_64 libsemanage-3.8-0.rc1.1.fc42.x86_64 libsepol-3.8-0.rc1.1.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.fc42.x86_64 libtool-ltdl-2.5.4-1.fc42.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-11.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.x86_64 pam-libs-1.7.0-3.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-3.fc42.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-1.fc42.x86_64 sqlite-libs-3.47.2-1.fc42.x86_64 systemd-libs-257-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-65.fc42.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1734573136.386465/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-lg0tz7nl/R-CRAN-scCustomize/R-CRAN-scCustomize.spec) Config(child) 0 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm) Config(fedora-rawhide-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734573136.386465/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.8.1-2.fc41.x86_64 dnf5-plugins-5.2.8.1-2.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm Start: build setup for R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: Copr repository 100% | 41.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 1.1 MiB/s | 26.0 KiB | 00m00s Copr repository 100% | 43.5 MiB/s | 12.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-Matrix x86_64 1.7.1-1.fc42.copr8157422 copr_base 8.2 MiB R-CRAN-Seurat x86_64 5.1.0-1.fc41.copr7435327 copr_base 3.6 MiB R-CRAN-SeuratObject x86_64 5.0.2-1.fc41.copr7428030 copr_base 3.0 MiB R-CRAN-circlize noarch 0.4.16-1.fc41.copr7353819 copr_base 3.7 MiB R-CRAN-cli x86_64 3.6.3-1.fc41.copr7649835 copr_base 2.4 MiB R-CRAN-cowplot noarch 1.1.3-1.fc41.copr7362489 copr_base 2.1 MiB R-CRAN-data.table x86_64 1.16.4-1.fc42.copr8353644 copr_base 4.5 MiB R-CRAN-dplyr x86_64 1.1.4-1.fc41.copr7361225 copr_base 2.6 MiB R-CRAN-forcats noarch 1.0.0-1.fc41.copr7361229 copr_base 568.9 KiB R-CRAN-ggbeeswarm noarch 0.7.2-1.fc41.copr7363082 copr_base 1.8 MiB R-CRAN-ggplot2 noarch 3.5.1-1.fc41.copr7361224 copr_base 7.1 MiB R-CRAN-ggprism noarch 1.0.5-1.fc41.copr7363806 copr_base 4.0 MiB R-CRAN-ggrastr noarch 1.0.2-1.fc41.copr7365812 copr_base 3.5 MiB R-CRAN-ggrepel x86_64 0.9.6-1.fc42.copr7995994 copr_base 454.2 KiB R-CRAN-glue x86_64 1.8.0-1.fc42.copr8094211 copr_base 349.1 KiB R-CRAN-janitor noarch 2.2.0-1.fc41.copr7365168 copr_base 562.2 KiB R-CRAN-lifecycle noarch 1.0.4-1.fc41.copr7354340 copr_base 282.7 KiB R-CRAN-magrittr x86_64 2.0.3-1.fc41.copr7349936 copr_base 417.3 KiB R-CRAN-paletteer noarch 1.6.0-1.fc41.copr7363077 copr_base 506.7 KiB R-CRAN-patchwork noarch 1.3.0-1.fc42.copr8025740 copr_base 4.1 MiB R-CRAN-pbapply noarch 1.7.2-1.fc41.copr7350039 copr_base 146.0 KiB R-CRAN-purrr x86_64 1.0.2-1.fc41.copr7357927 copr_base 878.1 KiB R-CRAN-rlang x86_64 1.1.4-1.fc41.copr7531082 copr_base 2.6 MiB R-CRAN-scales noarch 1.3.0-1.fc41.copr7356067 copr_base 1.1 MiB R-CRAN-scattermore x86_64 1.2-1.fc41.copr7363483 copr_base 542.1 KiB R-CRAN-stringi x86_64 1.8.4-1.fc41.copr7422034 copr_base 2.0 MiB R-CRAN-stringr noarch 1.5.1-1.fc41.copr7357924 copr_base 646.8 KiB R-CRAN-tibble x86_64 3.2.1-1.fc41.copr7359525 copr_base 1.7 MiB R-CRAN-tidyr x86_64 1.3.1-1.fc41.copr7362421 copr_base 1.8 MiB R-core x86_64 4.4.2-2.fc42 fedora 101.5 MiB R-devel x86_64 4.4.2-2.fc42 fedora 0.0 B Installing dependencies: R-CRAN-Cairo x86_64 1.6.2-1.fc41.copr7350122 copr_base 172.7 KiB R-CRAN-FNN x86_64 1.1.4.1-1.fc42.copr8059699 copr_base 239.9 KiB R-CRAN-GlobalOptions noarch 0.1.2-3.fc41.copr7350222 copr_base 1.1 MiB R-CRAN-KernSmooth x86_64 2.23.24-1.fc41.copr7456099 copr_base 145.3 KiB R-CRAN-MASS x86_64 7.3.61-1.fc41.copr7613806 copr_base 1.8 MiB R-CRAN-R6 noarch 2.5.1-1.fc41.copr7349938 copr_base 115.9 KiB R-CRAN-RANN x86_64 2.6.2-1.fc42.copr7942082 copr_base 95.5 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc41.copr7349948 copr_base 63.6 KiB R-CRAN-ROCR noarch 1.0.11-2.fc33 copr_base 594.7 KiB R-CRAN-RSpectra x86_64 0.16.2-1.fc41.copr7752181 copr_base 1.3 MiB R-CRAN-Rcpp x86_64 1.0.13.1-1.fc42.copr8204071 copr_base 8.4 MiB R-CRAN-RcppAnnoy x86_64 0.0.22-1.fc42.copr8100011 copr_base 668.7 KiB R-CRAN-RcppHNSW x86_64 0.6.0-1.fc41.copr7354842 copr_base 587.6 KiB R-CRAN-RcppTOML x86_64 0.2.2-1.fc41.copr7353935 copr_base 894.2 KiB R-CRAN-Rtsne x86_64 0.17-1.fc42.copr8100532 copr_base 258.1 KiB R-CRAN-abind noarch 1.4.8-1.fc42.copr8016475 copr_base 96.2 KiB R-CRAN-askpass x86_64 1.2.1-1.fc42.copr8109609 copr_base 40.5 KiB R-CRAN-base64enc x86_64 0.1.3-3.fc41.copr7349951 copr_base 51.7 KiB R-CRAN-beeswarm x86_64 0.4.0-1.fc41.copr7350348 copr_base 122.2 KiB R-CRAN-bitops x86_64 1.0.9-1.fc42.copr8106788 copr_base 61.8 KiB R-CRAN-bslib noarch 0.8.0-1.fc41.copr7803003 copr_base 10.0 MiB R-CRAN-caTools x86_64 1.18.3-1.fc42.copr7984365 copr_base 364.5 KiB R-CRAN-cachem x86_64 1.1.0-1.fc41.copr7452047 copr_base 104.7 KiB R-CRAN-cluster x86_64 2.1.8-1.fc42.copr8382668 copr_base 1.0 MiB R-CRAN-codetools noarch 0.2.20-1.fc41.copr7352636 copr_base 106.3 KiB R-CRAN-colorspace x86_64 2.1.1-1.fc41.copr7795131 copr_base 4.0 MiB R-CRAN-commonmark x86_64 1.9.2-1.fc42.copr8109546 copr_base 317.1 KiB R-CRAN-crayon noarch 1.5.3-1.fc41.copr7633037 copr_base 235.8 KiB R-CRAN-crosstalk noarch 1.2.1-1.fc41.copr7356073 copr_base 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libXrender x86_64 0.9.12-1.fc42 fedora 48.8 KiB libXrender-devel x86_64 0.9.12-1.fc42 fedora 50.1 KiB libXt x86_64 1.3.1-1.fc42 fedora 432.9 KiB libXtst x86_64 1.2.5-1.fc41 fedora 33.6 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libblkid-devel x86_64 2.40.2-8.fc42 fedora 44.9 KiB libdatrie x86_64 0.2.13-10.fc41 fedora 57.9 KiB libdeflate x86_64 1.23-1.fc42 fedora 117.2 KiB libdeflate-devel x86_64 1.23-1.fc42 fedora 25.9 KiB libffi-devel x86_64 3.4.6-3.fc42 fedora 33.1 KiB libfontenc x86_64 1.1.8-2.fc41 fedora 67.0 KiB libgfortran x86_64 14.2.1-6.fc42 fedora 3.0 MiB libicu x86_64 76.1-1.fc42 fedora 36.2 MiB libicu-devel x86_64 76.1-1.fc42 fedora 5.0 MiB libicu74 x86_64 74.2-1.fc42 fedora 34.9 MiB libjpeg-turbo x86_64 3.0.4-1.fc42 fedora 789.1 KiB liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB libmount-devel x86_64 2.40.2-8.fc42 fedora 63.5 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libpng x86_64 2:1.6.44-1.fc42 fedora 245.8 KiB libpng-devel x86_64 2:1.6.44-1.fc42 fedora 886.0 KiB libquadmath x86_64 14.2.1-6.fc42 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-6.fc42 fedora 21.9 KiB libselinux-devel x86_64 3.8-0.rc1.2.fc42 fedora 126.6 KiB libsepol-devel x86_64 3.8-0.rc1.1.fc42 fedora 120.8 KiB libstdc++-devel x86_64 14.2.1-6.fc42 fedora 15.4 MiB libtextstyle x86_64 0.23-1.fc42 fedora 198.7 KiB libthai x86_64 0.1.29-9.fc41 fedora 783.5 KiB libtiff x86_64 4.7.0-2.fc42 fedora 620.0 KiB libtirpc-devel x86_64 1.3.6-1.fc42 fedora 251.6 KiB libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB libxcb x86_64 1.17.0-3.fc42 fedora 1.2 MiB libxcb-devel x86_64 1.17.0-3.fc42 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.36-11.fc42 fedora 30.5 KiB libxml2-devel x86_64 2.12.8-2.fc41 fedora 3.4 MiB lksctp-tools x86_64 1.0.20-1.fc42 fedora 271.0 KiB lua x86_64 5.4.7-1.fc42 fedora 610.5 KiB lua-posix x86_64 36.2.1-7.fc41 fedora 599.8 KiB make x86_64 1:4.4.1-9.fc42 fedora 1.8 MiB mkfontscale x86_64 1.2.3-1.fc41 fedora 49.2 KiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB nspr x86_64 4.36.0-2.fc42 fedora 309.9 KiB nss x86_64 3.107.0-1.fc42 fedora 1.8 MiB nss-softokn x86_64 3.107.0-1.fc42 fedora 1.8 MiB nss-softokn-freebl x86_64 3.107.0-1.fc42 fedora 830.8 KiB nss-sysinit x86_64 3.107.0-1.fc42 fedora 21.1 KiB nss-util x86_64 3.107.0-1.fc42 fedora 200.2 KiB openblas x86_64 0.3.28-2.fc42 fedora 106.6 KiB openblas-openmp x86_64 0.3.28-2.fc42 fedora 39.3 MiB openblas-openmp64 x86_64 0.3.28-2.fc42 fedora 39.5 MiB pango x86_64 1.54.0-2.fc41 fedora 996.2 KiB pcre2-devel x86_64 10.44-1.fc41.1 fedora 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc41.1 fedora 590.1 KiB pcre2-utf32 x86_64 10.44-1.fc41.1 fedora 562.0 KiB pixman x86_64 0.44.2-1.fc42 fedora 664.5 KiB pixman-devel x86_64 0.44.2-1.fc42 fedora 49.4 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python3 x86_64 3.13.1-2.fc42 fedora 30.6 KiB python3-libs x86_64 3.13.1-2.fc42 fedora 39.8 MiB python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB suitesparse x86_64 7.7.0-2.fc41 fedora 139.9 MiB sysprof-capture-devel x86_64 47.2-1.fc42 fedora 273.2 KiB tcl x86_64 1:8.6.15-6.fc42 fedora 4.2 MiB tcl-devel x86_64 1:8.6.15-6.fc42 fedora 793.3 KiB tk x86_64 1:8.6.15-1.fc42 fedora 3.6 MiB tk-devel x86_64 1:8.6.15-1.fc42 fedora 985.4 KiB tre x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 75.9 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB tre-devel x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-71.fc41 fedora 122.7 KiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB tzdata-java noarch 2024b-1.fc42 fedora 99.4 KiB xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel x86_64 1:5.6.3-2.fc42 fedora 255.6 KiB zlib-ng-compat-devel x86_64 2.2.2-1.fc42 fedora 106.8 KiB Transaction Summary: Installing: 324 packages Total size of inbound packages is 451 MiB. Need to download 136 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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Finish: build setup for R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm Start: rpmbuild R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.czqXKA + umask 022 + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + test -d /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + /usr/bin/rm -rf /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xS6UUc + umask 022 + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + rm -rf scCustomize + /usr/bin/mkdir -p scCustomize + cd scCustomize + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/scCustomize_3.0.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d scCustomize/src ']' + true + '[' -d scCustomize/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ysxuxa + umask 022 + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd scCustomize + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.hf6LsG + umask 022 + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + '[' /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + mkdir /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd scCustomize + mkdir -p /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library scCustomize * installing *source* package ‘scCustomize’ ... ** package ‘scCustomize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘scCustomize’ finding HTML links ... done Add_Alt_Feature_ID html Add_CellBender_Diff html Add_Cell_Complexity html Add_Cell_QC_Metrics html Add_Hemo html Add_Mito_Ribo html Add_Pct_Diff html Add_Sample_Meta html Add_Top_Gene_Pct html Barcode_Plot html Blank_Theme html Case_Check html CellBender_Diff_Plot html CellBender_Feature_Diff html Cell_Highlight_Plot html Cells html Cells_by_Identities_LIGER html Cells_per_Sample html Change_Delim_All html Change_Delim_Prefix html Change_Delim_Suffix html CheckMatrix_scCustom html Cluster_Highlight_Plot html Cluster_Stats_All_Samples html Clustered_DotPlot html ColorBlind_Pal html Convert_Assay html Copy_From_GCP html Copy_To_GCP html Create_10X_H5 html Create_CellBender_Merged_Seurat html Create_Cluster_Annotation_File html Dark2_Pal html DimPlot_All_Samples html DimPlot_LIGER html DimPlot_scCustom html DiscretePalette_scCustomize html DotPlot_scCustom html Embeddings html Extract_Modality html Extract_Sample_Meta html Extract_Top_Markers html Factor_Cor_Plot html FeaturePlot_DualAssay html FeaturePlot_scCustom html FeatureScatter_scCustom html Feature_Present html Features html Fetch_Meta html Find_Factor_Cor html Hue_Pal html Idents html Iterate_Barcode_Rank_Plot html Iterate_Cluster_Highlight_Plot html Iterate_DimPlot_bySample html Iterate_FeaturePlot_scCustom html Iterate_Meta_Highlight_Plot html Iterate_PC_Loading_Plots html Iterate_Plot_Density_Custom html Iterate_Plot_Density_Joint html Iterate_VlnPlot_scCustom html JCO_Four html Liger_to_Seurat html MAD_Stats html Median_Stats html Merge_Seurat_List html Merge_Sparse_Data_All html Merge_Sparse_Multimodal_All html Meta_Highlight_Plot html Meta_Numeric html Meta_Present html Meta_Remove_Seurat html Move_Legend html NavyAndOrange html PC_Plotting html PalettePlot html Percent_Expressing html Plot_Cells_per_Sample html Plot_Density_Custom html Plot_Density_Joint_Only html Plot_Median_Genes html Plot_Median_Mito html Plot_Median_Other html Plot_Median_UMIs html Proportion_Plot html Pull_Cluster_Annotation html Pull_Directory_List html QC_Histogram html QC_Plot_GenevsFeature html QC_Plot_UMIvsFeature html QC_Plot_UMIvsGene html QC_Plots_Combined_Vln html QC_Plots_Complexity html QC_Plots_Feature html QC_Plots_Genes html QC_Plots_Mito html QC_Plots_UMIs html Random_Cells_Downsample html Read10X_GEO html Read10X_Multi_Directory html Read10X_h5_GEO html Read10X_h5_Multi_Directory html Read_CellBender_h5_Mat html Read_CellBender_h5_Multi_Directory html Read_CellBender_h5_Multi_File html Read_GEO_Delim html Read_Metrics_10X html Read_Metrics_CellBender html Reduction_Loading_Present html Rename_Clusters html Replace_Suffix html Seq_QC_Plot_Alignment_Combined html Seq_QC_Plot_Antisense html Seq_QC_Plot_Basic_Combined html Seq_QC_Plot_Exonic html Seq_QC_Plot_Genes html Seq_QC_Plot_Genome html Seq_QC_Plot_Intergenic html Seq_QC_Plot_Intronic html Seq_QC_Plot_Number_Cells html Seq_QC_Plot_Reads_in_Cells html Seq_QC_Plot_Reads_per_Cell html Seq_QC_Plot_Saturation html Seq_QC_Plot_Total_Genes html Seq_QC_Plot_Transcriptome html Seq_QC_Plot_UMIs html Setup_scRNAseq_Project html Single_Color_Palette html SpatialDimPlot_scCustom html Split_Layers html Split_Vector html Stacked_VlnPlot html Store_Misc_Info_Seurat html Store_Palette_Seurat html Subset_LIGER html Top_Genes_Factor html UnRotate_X html Updated_HGNC_Symbols html Updated_MGI_Symbols html VariableFeaturePlot_scCustom html Variable_Features_ALL_LIGER html VlnPlot_scCustom html WhichCells html as.LIGER html as.Seurat html as.anndata html deprecated html ensembl_hemo_id html ensembl_ieg_list html ensembl_mito_id html ensembl_ribo_id html ieg_gene_list html msigdb_qc_ensembl_list html msigdb_qc_gene_list html plotFactors_scCustom html reexports html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/as.Seurat.html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/WhichCells.html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/Cells.html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/Features.html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/Embeddings.html REDIRECT:topic Previous alias or file overwritten by alias: /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/00LOCK-scCustomize/00new/scCustomize/help/Idents.html scCustomize-package html scCustomize_Palette html seq_zeros html theme_ggprism_mod html viridis_shortcut html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scCustomize) + test -d scCustomize/src + rm -f /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT@@g '{}' ';' + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT Scanned 13 directories and 400 files, processed 366 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Processing files: R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.noarch Provides: R-CRAN-scCustomize = 3.0.1-1.fc42.copr8414039 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.oVuxSL + umask 022 + cd /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + test -d /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + rm -rf /builddir/build/BUILD/R-CRAN-scCustomize-3.0.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm Finish: build phase for R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1734573136.386465/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-scCustomize-3.0.1-1.fc42.copr8414039.src.rpm) Config(child) 0 minutes 57 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-scCustomize", "epoch": null, "version": "3.0.1", "release": "1.fc42.copr8414039", "arch": "noarch" }, { "name": "R-CRAN-scCustomize", "epoch": null, "version": "3.0.1", "release": "1.fc42.copr8414039", "arch": "src" } ] } RPMResults finished