%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  SVEMnet
%global packver   1.3.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.3.0
Release:          1%{?dist}%{?buildtag}
Summary:          Self-Validated Ensemble Models with Elastic Net Regression

License:          GPL-2 | GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-glmnet 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-gamlss 
BuildRequires:    R-CRAN-gamlss.dist 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-lhs 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-foreach 
Requires:         R-CRAN-glmnet 
Requires:         R-stats 
Requires:         R-CRAN-gamlss 
Requires:         R-CRAN-gamlss.dist 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-lhs 
Requires:         R-CRAN-doParallel 
Requires:         R-parallel 
Requires:         R-CRAN-foreach 

%description
Implements Self-Validated Ensemble Models (SVEM, Lemkus et al. (2021)
<doi:10.1016/j.chemolab.2021.104439>) using Elastic Net regression via
'glmnet' (Friedman et al. <doi:10.18637/jss.v033.i01>). SVEM averages
predictions from multiple models fitted to fractionally weighted
bootstraps of the data, tuned with anti-correlated validation weights.
Also implements the randomized permutation whole model test for SVEM (Karl
(2024) <doi:10.1016/j.chemolab.2024.105122>). \Code for the whole model
test was taken from the supplementary material of Karl (2024). Development
of this package was assisted by 'GPT o1-preview' for code structure and
documentation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}