%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  vcfppR
%global packver   0.7.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.7.0
Release:          1%{?dist}%{?buildtag}
Summary:          Rapid Manipulation of the Variant Call Format (VCF)

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-Rcpp 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-utils 

%description
The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an
easy-to-use 'C++' 'API' of 'htslib', offering full functionality for
manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves
as the R bindings of the 'vcfpp.h' library, enabling rapid processing of
both compressed and uncompressed VCF files. Explore a range of powerful
features for efficient VCF data manipulation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}