%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname VAJointSurv %global packver 0.1.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.1.1 Release: 1%{?dist}%{?buildtag} Summary: Variational Approximation for Joint Survival and Marker Models License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-psqn >= 0.3.0 BuildRequires: R-CRAN-survival BuildRequires: R-CRAN-Rcpp BuildRequires: R-splines BuildRequires: R-utils BuildRequires: R-stats BuildRequires: R-CRAN-SimSurvNMarker BuildRequires: R-CRAN-Matrix BuildRequires: R-methods BuildRequires: R-CRAN-lme4 BuildRequires: R-CRAN-RcppArmadillo BuildRequires: R-CRAN-RcppEigen BuildRequires: R-CRAN-testthat Requires: R-CRAN-survival Requires: R-CRAN-Rcpp Requires: R-splines Requires: R-utils Requires: R-stats Requires: R-CRAN-SimSurvNMarker Requires: R-CRAN-psqn >= 0.3.0 Requires: R-CRAN-Matrix Requires: R-methods Requires: R-CRAN-lme4 %description Estimates joint marker (longitudinal) and survival (time-to-event) outcomes using variational approximations. The package supports multivariate markers allowing for correlated error terms and multiple types of survival outcomes which may be left-truncated, right-censored, and recurrent. Time-varying fixed and random covariate effects are supported along with non-proportional hazards. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}