%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  Certara.NLME8
%global packver   3.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          3.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine

License:          LGPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-batchtools >= 0.9.9
BuildRequires:    R-CRAN-xml2 
BuildRequires:    R-CRAN-reshape 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-data.table 
Requires:         R-CRAN-batchtools >= 0.9.9
Requires:         R-CRAN-xml2 
Requires:         R-CRAN-reshape 
Requires:         R-utils 
Requires:         R-CRAN-data.table 

%description
Perform Nonlinear Mixed-Effects (NLME) Modeling using Certara's
NLME-Engine. Access the same Maximum Likelihood engines used in the
Phoenix platform, including algorithms for parametric methods, individual,
and pooled data analysis. The Quasi-Random Parametric
Expectation-Maximization Method (QRPEM) is also supported
<https://www.page-meeting.org/default.asp?abstract=2338>. Execution is
supported both locally or on remote machines. Remote execution includes
support for Linux Sun Grid Engine (SGE), Simple Linux Utility for Resource
Management (SLURM) grids, Linux and Windows multicore, and individual
runs.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}