%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  salmonMSE
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Management Strategy Evaluation for Salmon Species

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-MSEtool >= 3.7.2
BuildRequires:    R-CRAN-abind 
BuildRequires:    R-CRAN-RTMB 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-gsl 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rmarkdown 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-MSEtool >= 3.7.2
Requires:         R-CRAN-abind 
Requires:         R-CRAN-RTMB 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-grDevices 
Requires:         R-CRAN-gsl 
Requires:         R-methods 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rmarkdown 
Requires:         R-stats 
Requires:         R-utils 

%description
Simulation tools to evaluate the long-term effects of salmon management
strategies, including a combination of habitat, harvest, and habitat
actions. The stochastic age-structured operating model accommodates
complex life histories, including freshwater survival across early life
stages, juvenile survival and fishery exploitation in the marine life
stage, partial maturity by age class, and fitness impacts of hatchery
programs on natural spawning populations. 'salmonMSE' also provides an
age-structured conditioning model to develop operating models fitted to
data.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}