%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  hyreg2
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Estimate Latent Classes on a Mixture of Continuous and Dichotomous Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-flexmix 
BuildRequires:    R-CRAN-bbmle 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-flexmix 
Requires:         R-CRAN-bbmle 
Requires:         R-CRAN-ggplot2 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-utils 

%description
EQ-5D value set estimation can be done using the hybrid model likelihood
as described by Oppe and van Hout (2010) <doi:10.1002/hec.3560> and
Ramos-Goñi et al. (2017) <doi:10.1097/MLR.0000000000000283 >. The package
is based on `flexmix()` and among others contains an M-step-driver as
described by Leisch (2004) <doi:10.18637/jss.v011.i08>. Users can estimate
latent classes and address preference heterogeneity. Both uncensored and
censored data are supported. Furthermore, heteroscedasticity can be taken
into account. It is possible to control for different covariates on the
continuous and dichotomous parts of the data and start values can differ
between the expected latent classes.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}