%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname readyomics %global packver 0.2.0 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.2.0 Release: 1%{?dist}%{?buildtag} Summary: Ready-to-Use Omics Formatting, Analysis, and Visualization Pipeline License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.1.0 Requires: R-core >= 4.1.0 BuildArch: noarch BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-future BuildRequires: R-CRAN-future.apply BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-lme4 BuildRequires: R-CRAN-lmerTest BuildRequires: R-methods BuildRequires: R-CRAN-permute BuildRequires: R-CRAN-rlang BuildRequires: R-stats BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-tidyr BuildRequires: R-utils BuildRequires: R-CRAN-vegan BuildRequires: R-CRAN-zCompositions Requires: R-CRAN-dplyr Requires: R-CRAN-future Requires: R-CRAN-future.apply Requires: R-CRAN-ggplot2 Requires: R-CRAN-lme4 Requires: R-CRAN-lmerTest Requires: R-methods Requires: R-CRAN-permute Requires: R-CRAN-rlang Requires: R-stats Requires: R-CRAN-stringr Requires: R-CRAN-tidyr Requires: R-utils Requires: R-CRAN-vegan Requires: R-CRAN-zCompositions %description Provides a flexible and streamlined pipeline for formatting, analyzing, and visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, metabolomics). The package includes tools for shaping input data into analysis-ready structures, fitting linear or mixed-effect models, extracting key contrasts, and generating a rich variety of ready-to-use publication-quality plots. Designed for transparency and reproducibility across a wide range of study designs, with customizable components for statistical modeling. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}