%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  glscalibrator
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Automated Calibration and Analysis of 'GLS' (Global Location Sensor) Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-maps 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-utils 
BuildRequires:    R-grDevices 
BuildRequires:    R-graphics 
BuildRequires:    R-stats 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-maps 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-stringr 
Requires:         R-utils 
Requires:         R-grDevices 
Requires:         R-graphics 
Requires:         R-stats 

%description
Provides a fully automated workflow for calibrating and analyzing
light-level geolocation ('GLS') data from seabirds and other wildlife. The
'glscalibrator' package auto-discovers birds from directory structures,
automatically detects calibration periods from the first days of
deployment, processes multiple individuals in batch mode, and generates
standardized outputs including position estimates, diagnostic plots, and
quality control metrics. Implements the established threshold workflow
internally, following the methods described in 'SGAT' (Wotherspoon et al.
(2016) <https://github.com/SWotherspoon/SGAT>), 'GeoLight' (Lisovski et
al. (2012) <doi:10.1111/j.2041-210X.2012.00185.x>), and 'TwGeos' (Lisovski
et al. (2019) <https://github.com/slisovski/TwGeos>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}