%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  jentre
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Toolkit for the 'Entrez' API

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-rlang >= 1.1.0
BuildRequires:    R-CRAN-vctrs >= 0.7.0
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-httr2 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-xml2 
Requires:         R-CRAN-rlang >= 1.1.0
Requires:         R-CRAN-vctrs >= 0.7.0
Requires:         R-CRAN-cli 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-httr2 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-xml2 

%description
Interact with the 'Entrez' API hosted by the National Center for
Biotechnology Information (NCBI),
<https://www.ncbi.nlm.nih.gov/books/NBK25499/>. This package is focused on
working with sequence metadata and links. It handles pagination and
compensates for some API limitations to simplify these tasks. API calls
are printed to the console to highlight how high-level queries are
translated into individual HTTP requests.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}