%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  ecoTolerance
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Ecological Tolerance Indices

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-raster 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-methods 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-raster 
Requires:         R-CRAN-dplyr 
Requires:         R-stats 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-magrittr 
Requires:         R-methods 

%description
Computes the Road Tolerance Index (RTI) and the Human Footprint Tolerance
Index (HFTI) for species occurrence data. It automates data cleaning and
integrates spatial data (roads and human footprint) to produce
reproducible tolerance metrics for biodiversity and conservation research.
The HFTI calculation is based on the global human footprint dataset by Mu
et al. (2022) <doi:10.1038/s41597-022-01284-8>. This package is part of a
PhD thesis focused on amphibian ecology in Brazil.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}