%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname ctrdata
%global packver 1.20.0
%global rlibdir /usr/local/lib/R/library
Name: R-CRAN-%{packname}
Version: 1.20.0
Release: 1%{?dist}%{?buildtag}
Summary: Retrieve and Analyze Clinical Trials in Public Registers
License: MIT + file LICENSE
URL: https://cran.r-project.org/package=%{packname}
Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
BuildRequires: R-devel
Requires: R-core
BuildArch: noarch
BuildRequires: R-CRAN-curl >= 5.1.0
BuildRequires: R-CRAN-nodbi >= 0.10.7
BuildRequires: R-CRAN-jsonlite
BuildRequires: R-CRAN-httr
BuildRequires: R-CRAN-clipr
BuildRequires: R-CRAN-xml2
BuildRequires: R-CRAN-stringi
BuildRequires: R-CRAN-lubridate
BuildRequires: R-CRAN-jqr
BuildRequires: R-CRAN-dplyr
BuildRequires: R-CRAN-zip
BuildRequires: R-CRAN-V8
BuildRequires: R-CRAN-readr
BuildRequires: R-CRAN-digest
BuildRequires: R-CRAN-countrycode
BuildRequires: R-CRAN-htmlwidgets
Requires: R-CRAN-curl >= 5.1.0
Requires: R-CRAN-nodbi >= 0.10.7
Requires: R-CRAN-jsonlite
Requires: R-CRAN-httr
Requires: R-CRAN-clipr
Requires: R-CRAN-xml2
Requires: R-CRAN-stringi
Requires: R-CRAN-lubridate
Requires: R-CRAN-jqr
Requires: R-CRAN-dplyr
Requires: R-CRAN-zip
Requires: R-CRAN-V8
Requires: R-CRAN-readr
Requires: R-CRAN-digest
Requires: R-CRAN-countrycode
Requires: R-CRAN-htmlwidgets
%description
A system for querying, retrieving and analyzing protocol- and
results-related information on clinical trials from four public registers,
the 'European Union Clinical Trials Register' ('EUCTR',
), 'ClinicalTrials.gov'
( and also translating queries the retired
classic interface), the 'ISRCTN' () and the
'European Union Clinical Trials Information System' ('CTIS',
). Trial information is downloaded,
converted and stored in a database ('PostgreSQL', 'SQLite', 'DuckDB' or
'MongoDB'; via package 'nodbi'). Documents in registers associated with
trials can also be downloaded. Other functions identify deduplicated
records, easily find and extract variables (fields) of interest even from
complex nested data as used by the registers, merge variables and update
queries. The package can be used for meta-analysis and trend-analysis of
the design and conduct as well as of the results of clinical trials.
%prep
%setup -q -c -n %{packname}
# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
%files
%{rlibdir}/%{packname}