%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PSPI
%global packver   1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Propensity Score Predictive Inference for Generalizability

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-arm 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-nnet 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-RcppDist 
BuildRequires:    R-CRAN-RcppProgress 
BuildRequires:    R-CRAN-pg 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-arm 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-stringr 
Requires:         R-stats 
Requires:         R-CRAN-nnet 
Requires:         R-methods 

%description
Provides a suite of Propensity Score Predictive Inference (PSPI) methods
to generalize treatment effects in trials to target populations. The
package includes an existing model Bayesian Causal Forest (BCF) and four
PSPI models (BCF-PS, FullBART, SplineBART, DSplineBART). These methods
leverage Bayesian Additive Regression Trees (BART) to adjust for
high-dimensional covariates and nonlinear associations, while SplineBART
and DSplineBART further use propensity score based splines to address
covariate shift between trial data and target population.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}