%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  integrity
%global packver   1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Tests Checking for Implausible Values in Clinical Trials Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-janitor 
BuildRequires:    R-CRAN-gtsummary 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-car 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-janitor 
Requires:         R-CRAN-gtsummary 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-car 
Requires:         R-CRAN-rlang 

%description
Sixteen individual participant data-specific checks in a report-style
result. Items are automated where possible, and are grouped into eight
domains, including unusual data patterns, baseline characteristics,
correlations, date violations, patterns of allocation, internal and
external inconsistencies, and plausibility of data. The package may be
applied by evidence synthesists, editors, and others to determine whether
a randomised controlled trial may be considered trustworthy to contribute
to the evidence base that informs policy and practice. For more details,
see Hunter et al. (2024) <doi:10.1002/jrsm.1738> and
<doi:10.32614/RJ-2017-008> in the same issue of Research Synthesis
Methods.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}