%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  fluorojip
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Analysis of Chlorophyll a Fluorescence Transient Parameters

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-stats 
BuildRequires:    R-utils 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-readxl 
Requires:         R-stats 
Requires:         R-utils 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-CRAN-readxl 

%description
Computes chlorophyll a fluorescence transient parameters from fluorescence
summary data, including minimum and maximum fluorescence, selected
transient steps, and area. Provides standard photosynthetic performance
indices and fluxes per reaction center and per cross section. Includes
helpers to read exported trace tables in supported 'csv' formats and
validation workflows based on bundled example files, as well as
visualization tools and an interactive 'shiny' interface. The implemented
calculations are based on Strasser et al. (2004)
<doi:10.1007/978-1-4020-3218-9_12> and Stirbet and Govindjee (2011)
<doi:10.1016/j.jphotobiol.2010.12.010>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}